Bioconductor S4Vectors

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S4Vectors

updated 4 days ago by shepherl 3.9k • written 4 days ago by bounlu • 0

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S4Vectors

updated 5 months ago by Hervé Pagès 16k • written 5 months ago by Dario Strbenac ★ 1.5k

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S4Vectors

6 months ago GE • 0

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S4Vectors

updated 7 months ago by Hervé Pagès 16k • written 7 months ago by Dario Strbenac ★ 1.5k

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S4Vectors

written 12 months ago by Michael Steinbaugh ▴ 90

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Answer: Once again a "Model matrix not full rank" by swbarnes2 ★ 1.3k

Replicate numbers, like the 1 in control_1 are fine in sample names, but never add them to anything else in colData. From the computer's p…

Answer: limma Intercept vs No-intercept models completely changing DMR results? by Gordon Smyth 50k

I'll add a little bit of general advice to James' answer. You seem to have the misunderstanding that you can change the design matrix but …

Answer: package goseq seems to be not available on the latest version of R by Gordon Smyth 50k

It is true that goseq isn't available for Bioc 3.19. That is because goseq depends on txbmaker, which is itself not yet available for Bioc…

Answer: limma Intercept vs No-intercept models completely changing DMR results? by James W. MacDonald 65k

This part: ``` design_intercept <- model.matrix(~Alt+Sex+Age+PC1, data=targets_Sherpa) colnames(design_intercept) <- c("AltSHP_LA","Al…

Comment: CombineArrays for EPIC and EPIC V2 by Kim • 0

Thank you Tim, this is a great help in getting me started!

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Answer: CombineArrays for EPIC and EPIC V2

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