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TCGAWorkflow
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Postdoc
TCGAWorkflow
12 weeks ago
sameerahmadguru
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Gene A mutation vs Gene B amplification using TCGA datasets
TCGAWorkflow
12 months ago
Begin-R
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1
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720
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tcga expression data
TCGAWorkflow
updated 19 months ago by
ATpoint
★ 4.0k • written 19 months ago by
fatemehfakhari74
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634
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Query on TCGA
TCGAbiolinks
TCGAWorkflow
20 months ago
hemangininaik09
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945
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Identifying presence of certain genes
DifferentialExpression
TCGAWorkflow
2.5 years ago
Sam
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Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
pl23
• 0
Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …
Answer: PCA plot suggestions
by
Michael Love
41k
For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
by
ussarizona
▴ 10
Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
Answer: Deseq2. decontXcounts not integers. Useful alternative?
by
Michael Love
41k
Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…
Answer: ATACseq merge peaks
by
ATpoint
★ 4.0k
That depends on your analysis. Typically, for differential analysis (and convenience) you would produce a single set of peaks (e.g. by merg…
Votes
Answer: Math expression in shapeCustom legend in EnhancedVolcano
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
biomaRt error: database disk image is malformed
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