Bioconductor TargetScoreData

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TargetScoreData

updated 2.8 years ago by shepherl 4.1k • written 2.8 years ago by 1051444231 • 0

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TargetScoreData batchelor

written 2.6 years ago by Syed Zaheer ▴ 10

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Comment: getBM from biomaRt inconsistencies found with .gtf files across multiple species by Benjamin ▴ 20

I have received a response from Ensembl regarding the items I have listed above. I wanted to post it here and will continue to post update…

Answer: Error in cnetplot by Guido Hooiveld ★ 4.1k

Unfortunately you did not show how you generated your input data (the object `enrichment`), nor did you show the output from `sessionInfo()…

Answer: getBM from biomaRt inconsistencies found with .gtf files across multiple species by Mike Smith ★ 6.6k

I think this is because Ensembl can assign different Gene IDs to "the same gene" if it is found both on a standard chromosome and a scaffol…

Comment: Explannation for ROAST results by Jay • 0

Yes! Tnx for your reply. I didn't notice the group design problem, so stupid. Thank you!

Answer: Explannation for ROAST results by ATpoint ★ 4.8k

The `contrast = 2` in an intercept-less design test whether the expression in the 2nd group is not 0. You can easily solve this by using `~…

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Answer: Explannation for ROAST results

clusterProfiler-GO enrichment Error

A: Machine learning in R book

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