Bioconductor TileDBArray

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DelayedArray TileDBArray

15 months ago • updated 14 months ago sandmann.t ▴ 70

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TileDBArray HDF5Array DelayedArray

3.5 years ago Koki ▴ 10

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DelayedArray TileDBArray HDF5Array

updated 3.5 years ago by Hervé Pagès 16k • written 3.6 years ago by Koki ▴ 10

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TileDBArray HDF5Array MultiAssayExperiment

3.8 years ago Thomas Sandmann ▴ 90

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Answer: scuttle::perFeatureQCMetrics runs very slow for big scRNA-seq data by Aaron Lun ★ 28k

You don't mention how your matrix data is being represented, but if it's a file-backed matrix (e.g., `HDF5Matrix` or one of its variants, b…

Comment: contrast matrix design for a continuous variable by dtzhu337 • 0

Thank you, Gordon. X is time splines for time point, and yes, it's needed. However, I was also thinking to incorporate time point with se…

Answer: contrast matrix design for a continuous variable by Gordon Smyth 52k

Yes, the design and contrasts are correct. Your analysis is also adjusted for covariates defined by X, which I assume is what you want to …

Comment: fail to use addPerROIQC in Rmd by liu.n • 0

That's odd. So it can run successfully within markdown but would be failed when knitting?

Comment: fail to use addPerROIQC in Rmd by joseph.joonsang • 0

> dim(spe) [1] 19962 425

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Answer: contrast matrix design for a continuous variable

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Answer: What type of counts data to import for performing Isoform analysis in edgeR

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