3 days ago • updated 2 hours ago
Koki
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18 days ago • updated 17 days ago
Koki
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Hervé Pagès
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written 24 days ago by
Koki
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12 weeks ago • updated 11 weeks ago
Thomas Sandmann
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Aaron Lun
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written 2.8 years ago by
Alexander Azarian
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Mike Smith
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written 3.0 years ago by
cath
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Recent ...
Replies
Comment: phenotypic table for DESeqDataSetFromHTSeqCount
by
Michael Love
33k
I can't help debug because you haven't posted the code where you actually get the error. Can you post that, and also the output from `trace…
Comment: phenotypic table for DESeqDataSetFromHTSeqCount
by
rbenel
▴
20
alternatively is there a work around for `DESeqDataSetFromHTSeqCount`. I guess I could convert it to a count matrix and then use `DESeqData…
Comment: erorr in normalization with DiffBind: pv$binding[, colnum] <- pv$peaks[[i]]$RPKM
by
ben.vanderveer
•
0
Thanks, it works!
I did call the object in my script different, but for clarity here I changed it.
best, Ben
Comment: phenotypic table for DESeqDataSetFromHTSeqCount
by
rbenel
▴
20
Yea, no issue there...
```
FirstFile <- read.table(file.path(ExonCountFiles, sampleFiles)[1])
head(FirstFile)
V1 V2
1 EN…
Comment: phenotypic table for DESeqDataSetFromHTSeqCount
by
Michael Love
33k
Another issue is whether R is allowed to read those files I guess.
Try reading one in with `read.table` or `scan(..., what="char")`
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