Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
HDF5Array
•
reset
3
votes
3
replies
411
views
Reading huge bismark coverage files using bbseq::read.bismark
HDF5Array
BiocGenerics
BiocParallel
Biobase
3 months ago
jacques.imbert
• 0
4
votes
6
replies
888
views
Problem loading HDF5Array in R 4.3.2
HDF5Array
updated 4 months ago by
Akshay
• 0 • written 8 months ago by
Sarah
▴ 10
0
votes
2
replies
622
views
Error in H5Fopen
HDF5Array
updated 12 months ago by
James W. MacDonald
66k • written 12 months ago by
gabriele.favaretto
• 0
2
votes
3
replies
1.8k
views
Efficiently working with HDF5-backed SingleCellExperiments
HDF5Array
SingleCellExperiment
DelayedArray
22 months ago
merv
▴ 130
1
vote
1
reply
1.3k
views
Extract only dataframes from AnnData objects
rhdf5
HDF5Array
anndata
SingleCellExperiment
updated 23 months ago by
Peter Hickey
▴ 740 • written 23 months ago by
merv
▴ 130
5
votes
1
reply
2.9k
views
How to save `SingleCellExperiment` with `DelayedArray` assay(s) in a portable format?
HDF5Array
SingleCellExperiment
DelayedArray
23 months ago
merv
▴ 130
0
votes
0
replies
1.2k
views
Combining multiple MTX (matrix market) files to HDF5 Array format
HDF5Array
SingleCellExperiment
DelayedArray
23 months ago
merv
▴ 130
4
votes
3
replies
1.1k
views
Problem opening hdf5 files previously created with HDF5Array functions
HDF5Array
updated 2.8 years ago by
Mike Smith
★ 6.5k • written 2.8 years ago by
eric.kern13
▴ 20
4
votes
13
replies
2.1k
views
Speeding up of DelayedArray::write_block()
HDF5Array
DelayedArray
updated 9 months ago by
Hervé Pagès
16k • written 2.8 years ago by
Koki
▴ 10
4
votes
3
replies
1.2k
views
Temporal directory setting for DelayedArray
HDF5Array
DelayedArray
3.0 years ago
Koki
▴ 10
2
votes
3
replies
1.2k
views
Generating a DelayedArray with a size greater than .Machine$integer.max
bit64
HDF5Array
DelayedArray
updated 3.1 years ago by
Hervé Pagès
16k • written 3.1 years ago by
Koki
▴ 10
3
votes
5
replies
1.4k
views
Block processing matrices of different dimensions with DelayedArray
HDF5Array
DelayedArray
updated 3.1 years ago by
Hervé Pagès
16k • written 3.1 years ago by
Pedro Baldoni
▴ 40
0
votes
1
reply
952
views
How to incrementaly load the nzdata and nzindex from SparseArraySeed
TileDBArray
HDF5Array
DelayedArray
3.2 years ago • updated 3.1 years ago
Koki
▴ 10
9
votes
8
replies
1.6k
views
Processing time of blockApply and DelayedArray
DelayedArray
HDF5Array
updated 3.1 years ago by
Hervé Pagès
16k • written 3.2 years ago by
Pedro Baldoni
▴ 40
2
votes
4
replies
1.2k
views
`aperm`, `realize`, `writeHDF5Array`, and `ReshapedHDF5Array` are block size aware?
HDF5Array
DelayedArray
3.2 years ago
Koki
▴ 10
1
vote
2
replies
1.2k
views
Error: C stack usage of HDF5Array
DelayedArray
HDF5Array
3.2 years ago
Koki
▴ 10
2
votes
6
replies
1.6k
views
"dim<-" against on-disk arrays
DelayedArray
TileDBArray
HDF5Array
updated 3.2 years ago by
Hervé Pagès
16k • written 3.3 years ago by
Koki
▴ 10
6
votes
6
replies
1.8k
views
Is it possible to create `HDF5Array` Delayed Arrays from HDF5 files hosted on S3?
TileDBArray
HDF5Array
MultiAssayExperiment
3.4 years ago
Thomas Sandmann
▴ 90
4
votes
2
replies
1.4k
views
HDF5Array Single cell experiment objects - can on-disk files change?
HDF5Array
updated 5.4 years ago by
Aaron Lun
★ 28k • written 5.4 years ago by
sarah.williams1
▴ 40
1
vote
4
replies
1.9k
views
Trouble loading 'lumi' package
lumi
illumina
hdf5array
updated 5.9 years ago by
James W. MacDonald
66k • written 5.9 years ago by
Alexander Azarian
▴ 30
12
votes
15
replies
3.7k
views
error with HDF5Array
hdf5array
biocparallel
updated 6.2 years ago by
Mike Smith
★ 6.5k • written 6.2 years ago by
cath
▴ 30
4
votes
1
reply
2.5k
views
Using HDF5Array writeHDF5Array for a large dgCMatrix
HDF5Array
dgCMatrix
updated 6.3 years ago by
Aaron Lun
★ 28k • written 6.3 years ago by
rubi
▴ 110
22 results • Page
1 of 1
Recent ...
Replies
Comment: 'path' must be string
by
James W. MacDonald
66k
Yes. We already knew that from the error message, and I told you that in my previous email. The point wasn't to figure out *where* the err…
Comment: 'path' must be string
by
cpierce2
• 0
I ran the debugger and this is the line that causes the error: ``` if (any(startsWith(pkcData[["RTS_ID"]][1L], "RTS")) & any(startsWith(pr…
Comment: Generating surrogate variables across multiple variables of interest
by
Robert
• 0
Yes, we have several biomarkers, and a proteomic set, so we are characterizing each biomarker by it's proteomic association(s). The use for…
Comment: Error running tximeta
by
Guido Hooiveld
★ 4.0k
FYI (since I just finalized a run with `salmon`). For each sample (`.`) an output folder is created that contains 3 files (`cmd_info.json`…
Comment: Error running tximeta
by
Michael Love
42k
Tximeta uses the full directory. There are files that give the key information about the transcriptome. It's not a good idea to selectively…
Votes
Question: Deconvolution Methods on RNA-Seq Data (Mixed cell types)
Answer: Understanding how to contrast two treatments in DESeq2
Answer: Understanding how to contrast two treatments in DESeq2
Cannot extract TxFeatures for a defined GRanges object
Limma time series spline help
Awards
• All
Popular Question
to
Lluís Revilla Sancho
▴ 730
Popular Question
to
maltethodberg
▴ 180
Scholar
to
Michael Love
42k
Popular Question
to
Leonardo Collado Torres
★ 1.1k
Scholar
to
Gordon Smyth
51k
Locations
• All
France,
6 minutes ago
Ann Arbor,
14 minutes ago
San Diego,
24 minutes ago
United States,
41 minutes ago
United States,
49 minutes ago
Traffic: 692 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6