updated 2.8 years ago by
Gordon Smyth
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written 2.8 years ago by
josmantorres
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Comment: ChAMP pipeline error (champ.import)
by
dr3wgrants
•
0
The user's array type is EPIC, and they have verified the Sentrix IDs and IDAT files. To troubleshoot, they should check for consistency in…
Comment: ChAMP pipeline error (champ.import)
by
dr3wgrants
•
0
The user is facing an error while using ChAMP, a tool for DNA methylation data analysis like [wood craft ideas][1]. They merged two CSV fil…
Comment: error in ChAMP loading file
by
dr3wgrants
•
0
Confirm that the IDAT files are in the correct directory and follow the required naming convention. Make sure the IDAT files are compatible…
Answer: error in ChAMP loading file
by
dr3wgrants
•
0
If you're encountering issues loading files with ChAMP while playing [Lomi lomi massage][1], specifically with the pd file (samplesheet), t…
Answer: Can DESeq2 handle huge variations in sequencing depth among samples?
by
Michael Love
40k
In the 2014 paper we note there is an issue if depth is confounded across condition.
One solution to this design issue is that you coul…
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