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VIPER
•
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0
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replies
594
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question on the p value for VIPER results by dorothea
RNAseq
VIPER
Doth
22 months ago
snowmattin
• 0
0
votes
0
replies
655
views
Using VIPER to compare protein activity in normal vs diseased samples
viper
2.6 years ago
tjbencomo
• 0
0
votes
2
replies
850
views
Trying to download VIPER
software error
viper
updated 4.8 years ago by
Steve Lianoglou
★ 13k • written 4.8 years ago by
rakhatib
• 0
4
votes
14
replies
3.8k
views
Data input for aracne2regulon function in viper package
viper
updated 6 months ago by
YNPAN910
• 0 • written 4.9 years ago by
maya.kappil
▴ 30
0
votes
0
replies
1.2k
views
VIPER (Protein Activity Inference) gene expression signature format
VIPER
aracne.networks
7.4 years ago
user31888
▴ 30
0
votes
1
reply
1.1k
views
Use of Viper with a regulatory network built with my dataset or another one?
viper
aracne
regulatory network
aracne.networks
7.8 years ago
ldetorrente
▴ 10
6 results • Page
1 of 1
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Replies
Comment: 'path' must be string
by
James W. MacDonald
66k
Yes. We already knew that from the error message, and I told you that in my previous email. The point wasn't to figure out *where* the err…
Comment: 'path' must be string
by
cpierce2
• 0
I ran the debugger and this is the line that causes the error: ``` if (any(startsWith(pkcData[["RTS_ID"]][1L], "RTS")) & any(startsWith(pr…
Comment: Generating surrogate variables across multiple variables of interest
by
Robert
• 0
Yes, we have several biomarkers, and a proteomic set, so we are characterizing each biomarker by it's proteomic association(s). The use for…
Comment: Error running tximeta
by
Guido Hooiveld
★ 4.0k
FYI (since I just finalized a run with `salmon`). For each sample (`.`) an output folder is created that contains 3 files (`cmd_info.json`…
Comment: Error running tximeta
by
Michael Love
42k
Tximeta uses the full directory. There are files that give the key information about the transcriptome. It's not a good idea to selectively…
Votes
Question: Deconvolution Methods on RNA-Seq Data (Mixed cell types)
Answer: Understanding how to contrast two treatments in DESeq2
Answer: Understanding how to contrast two treatments in DESeq2
Cannot extract TxFeatures for a defined GRanges object
Limma time series spline help
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Lluís Revilla Sancho
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maltethodberg
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Michael Love
42k
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Leonardo Collado Torres
★ 1.1k
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Gordon Smyth
51k
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