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Answer: Typo in the help of lmFit()
by
Gordon Smyth
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Thanks for the heads-up.
> The _Details_ in the documentation of lmFit() still says that the default correlation is 0.75
Yes, you're righ…
Comment: Adding gene names as row annotations to an RNAseq heatmap made with ComplexHeatm
by
caroline.zanchi
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Thank you !
![enter image description here][1]
In the end I did
```r
rn2 <- select(org.Dm.eg.db, row.names(cent_expr_matrix), "GENENAME"…
Answer: Memory issue while using "quickcluster" and "computeSumFactors" functions on sin
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The obvious solution is to use cloud computing, which is likely cheaper than getting more RAM for your computer.
Answer: Adding gene names as row annotations to an RNAseq heatmap made with ComplexHeatm
by
James W. MacDonald
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```
library(org.Dm.eg.db)
rn <- select(org.Dm.eg.db, row.names(cent_expr_matrix), "SYMBOL","FLYBASE")
## ensure no NA values get propaga…
Comment: Discrepancies in normalised count data vs unnormalised
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AMgroup
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Thank you for your explanation, that makes sense. Do you have any suggestions on how to deal with this issue? if it is an issue? especially…
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