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VIPER
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0
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31
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What Input-type do I use in decouplR::run_viper?
decoupleR
viper
DESeq2
1 day ago
Julian
• 0
4
votes
14
replies
4.8k
views
Data input for aracne2regulon function in viper package
viper
updated 16 months ago by
YNPAN910
• 0 • written 5.8 years ago by
maya.kappil
▴ 30
0
votes
0
replies
812
views
question on the p value for VIPER results by dorothea
RNAseq
VIPER
Doth
2.7 years ago
snowmattin
• 0
0
votes
0
replies
885
views
Using VIPER to compare protein activity in normal vs diseased samples
viper
3.4 years ago
tjbencomo
• 0
0
votes
2
replies
1.1k
views
Trying to download VIPER
software error
viper
updated 5.6 years ago by
Steve Lianoglou
★ 13k • written 5.6 years ago by
rakhatib
• 0
0
votes
0
replies
1.3k
views
VIPER (Protein Activity Inference) gene expression signature format
VIPER
aracne.networks
8.2 years ago
user31888
▴ 30
0
votes
1
reply
1.4k
views
Use of Viper with a regulatory network built with my dataset or another one?
viper
aracne
regulatory network
aracne.networks
8.6 years ago
ldetorrente
▴ 10
7 results • Page
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Answer: Typo in the help of lmFit()
by
Gordon Smyth
52k
Thanks for the heads-up. > The _Details_ in the documentation of lmFit() still says that the default correlation is 0.75 Yes, you're righ…
Comment: Adding gene names as row annotations to an RNAseq heatmap made with ComplexHeatm
by
caroline.zanchi
▴ 10
Thank you ! ![enter image description here][1] In the end I did ```r rn2 <- select(org.Dm.eg.db, row.names(cent_expr_matrix), "GENENAME"…
Answer: Memory issue while using "quickcluster" and "computeSumFactors" functions on sin
by
James W. MacDonald
68k
The obvious solution is to use cloud computing, which is likely cheaper than getting more RAM for your computer.
Answer: Adding gene names as row annotations to an RNAseq heatmap made with ComplexHeatm
by
James W. MacDonald
68k
``` library(org.Dm.eg.db) rn <- select(org.Dm.eg.db, row.names(cent_expr_matrix), "SYMBOL","FLYBASE") ## ensure no NA values get propaga…
Comment: Discrepancies in normalised count data vs unnormalised
by
AMgroup
• 0
Thank you for your explanation, that makes sense. Do you have any suggestions on how to deal with this issue? if it is an issue? especially…
Votes
Answer: Adding gene names as row annotations to an RNAseq heatmap made with ComplexHeatm
Answer: Adding gene names as row annotations to an RNAseq heatmap made with ComplexHeatm
Deseq2 DE analysis of host-pathogen samples (model separately or jointly?)
Comment: Check removeBatchEffect effectiveness
Answer: Check removeBatchEffect effectiveness
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