Bioconductor Venndiagram

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Venndiagram files text

3.0 years ago ratto • 0

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venndiagram

7.2 years ago salamandra ▴ 20

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Limma venndiagram r

updated 4.1 years ago by luca.soldini • 0 • written 7.5 years ago by bajwa.m • 0

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venn diagram venndiagram limma microarray differential expression

updated 7.5 years ago by James W. MacDonald 68k • written 7.5 years ago by A ▴ 60

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VennDiagram venn diagram circle size draw.triple.venn

updated 9.1 years ago by James W. MacDonald 68k • written 9.1 years ago by Gary ▴ 20

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Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2 by Michael Love 43k

You just need the mouse identifier (controls baseline) and the group specific allelic effect.

Comment: limpa-blank normalization and Spectronaut's PTM stoichiometry by Julia Broadbent • 0

Hi Emily, Just sharing a resource for handling contaminants - we use the methods described in [Frankenfield et al. (2022)](https://pubs.acs…

Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2 by Michael Love 43k

You may want to speak with a local statistician, because you don't just want to find the first full rank matrix and run with that if it doe…

Comment: limpa-blank normalization and Spectronaut's PTM stoichiometry by Gordon Smyth 53k

It is fine for your mass spec facility to include blank samples as part of their internal QC, but such samples should not in my opinion be …

Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2 by chp265 • 0

Hm, okay, in building a fake model by hand I think I'm realizing the problem: `mouse` and its variants are ideally acting as basically a ra…

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A: Filtering read counts matrix: how to deal with duplicated gene symbols, differen

Comment: limpa analysis advice

Answer: When to use edgeR or limma

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