Showing : venndiagram • reset
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Online Venn diagram generator where I can paste text files containing gene name lists to get the diagram
Venndiagram files text
2.2 years ago ratto • 0
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891
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draw.pairwise.venn: Misplaced line connecting external area label
venndiagram
6.4 years ago salamandra ▴ 20
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Remove box frame from vennDiagram plot in limma
Limma venndiagram r
updated 3.2 years ago by • 0 • written 6.6 years ago by • 0
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venDiagram after limma showing more genes after specifying up or down regulated specifically
venn diagram venndiagram limma microarray differential expression
updated 6.7 years ago by 68k • written 6.7 years ago by ▴ 40
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How to scale circle sizes in VennDiagram using draw.triple.venn
VennDiagram venn diagram circle size draw.triple.venn
updated 8.3 years ago by 68k • written 8.3 years ago by ▴ 20
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Comment: Using TPM from tximport of Salmon output for singscore by Kent • 0
Thanks Michael. Just out of curiosity, would you also use the same technique for things like clustering analysis or when looking at the abn…
Comment: GAGE kegg.gsets() self-signed certificate error by Lucas • 0
Hello, I ended up solving the issue by using the first strategy: Disable the SSL certificate Verification. I used the following code to …
Comment: Clarification on GOALL / GO2ALLORFs mapping by DavideSant • 0
Thank you for your answer James. I have to disagree though, at the SGD webpage you posted there is no indication that "GO:0045719 - negati…
Comment: Guidance Needed: Best Practices for Handling Technical Replicates in RNA-seq Ana by Michael Love 43k
And to add to this: when you put a generic package (e.g. DESeq2) as a tag, it actually emails the maintainer.
Answer: Using TPM from tximport of Salmon output for singscore by Michael Love 43k
TPM is fine, I've also sometimes used TPM with some robust column scaling, e.g.: ``` sf <- DESeq2::estimateSizeFactorsForMatrix(txi$abu…
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Answer: Using TPM from tximport of Salmon output for singscore
Comment: Using TPM from tximport of Salmon output for singscore
Answer: affy::rma results doesn't match with ncbi website
Using edgeR::voomLmFit for the analysis of paired clinical RNA-seq samples with multiple cell types
Answer: Replicates in DESeq2
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