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venndiagram
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Online Venn diagram generator where I can paste text files containing gene name lists to get the diagram
Venndiagram
files
text
15 months ago
ratto
• 0
0
votes
0
replies
724
views
draw.pairwise.venn: Misplaced line connecting external area label
venndiagram
5.5 years ago
salamandra
▴ 20
1
vote
4
replies
1.0k
views
Remove box frame from vennDiagram plot in limma
Limma
venndiagram
r
updated 2.4 years ago by
luca.soldini
• 0 • written 5.7 years ago by
bajwa.m
• 0
1
vote
4
replies
1.5k
views
venDiagram after limma showing more genes after specifying up or down regulated specifically
venn diagram
venndiagram
limma
microarray
differential expression
updated 5.8 years ago by
James W. MacDonald
65k • written 5.8 years ago by
A
▴ 40
1
vote
2
replies
1.8k
views
How to scale circle sizes in VennDiagram using draw.triple.venn
VennDiagram
venn diagram
circle size
draw.triple.venn
updated 7.4 years ago by
James W. MacDonald
65k • written 7.4 years ago by
Gary
▴ 20
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Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
by
James W. MacDonald
65k
Both `RUVseq` and `sva` are meant to be used to remove technical variability. The problem is the identification of variability that is tech…
Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
by
Alexandre
• 0
Hello James, Thank you very much for your answer and taking the time to read my post. I understand your remark, but isn't the approach o…
Comment: PCA plot suggestions
by
JKim
• 0
cross post: https://www.biostars.org/p/9593486/
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
by
James W. MacDonald
65k
You cannot correct for technical variability due to batch if samples are nested in batch. The technical and biological differences are comp…
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
by
James W. MacDonald
65k
You will need to show some reproducible code for anybody to track this down. Please note that `DESeq2` has been used by thousands of people…
Votes
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
Answer: Use of negative binomial model for exponential decay rate estimation using DESeq
C: null model and DEXSeqDataSet object in DEXSEQ
A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?
A: How to explain how DESeq2 works to someone with zero bioinformatics background?
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