Showing : WGS • reset
0
votes
0
replies
952
views
Single cell WGS and ATAC-seq tools
single cell singlecellexperiment atac seq WGS
4.5 years ago lirongrossmann ▴ 80
0
votes
1
reply
1.2k
views
Bioconductor and WGS: recommended practices?
whole genome sequencing variants vcf WGS
6.0 years ago Vincent J. Carey, Jr. 6.7k
0
votes
0
replies
1.5k
views
Job: Senior Bioinformatician, Children's Cancer Research Institute Vienna, Austria
postdoc rnaseq NGS WGS bioinformatician job Job
7.0 years ago da.de ▴ 30
2
votes
2
replies
1.6k
views
detecting of CNV in WGS/WES data
CNV WGS WES
updated 7.6 years ago by ▴ 110 • written 7.6 years ago by ▴ 670
4 results • Page 1 of 1
Recent ...
Replies
Answer: SingleR with multiple single cell references by Aaron Lun ★ 28k
> Is it necessary to piece together the individual steps manually (e.g. aggregateReference, trainSingleR, classifySingleR, combineRecompute…
Answer: Automatically install dependencies by ATpoint ★ 4.7k
The BiocManager, which is sort of an extended wrapper around `install.packages`, installs all R dependencies. If you see errors then this i…
Answer: To count or not to count multi-overlapping reads? by Gordon Smyth 52k
> How does it handle reads that map to a gene that is located in a region that also has another gene but on the alternate strand? Overlapp…
Comment: Weird p-values using DESeq2? by ATpoint ★ 4.7k
This does not look like normalized counts but raw counts. Consider using `counts(dds, normalized = TRUE)` or the output of `normTransform()…
Answer: Weird p-values using DESeq2? by Wolfgang Huber ★ 13k
Dear Ingrid, thank you for asking. Can you provide the input count matrix (you can "pseudonymize" the biological conditions and the gene n…
Votes
A: Fraction count for multi mapping reads; how to generate input file for Deseq2 fo
Comment: Weird p-values using DESeq2?
Comment: Overcoming confounding in batch effect correction
Answer: Store Matrix in DataFrame Cell
Answer: enrichGOgradient color change
Awards • All
Popular Question to maltethodberg ▴ 180
Popular Question to abadgerw • 0
Popular Question to Jim Nemesh ▴ 10
Popular Question to Wolfgang Huber ★ 13k
Teacher to James W. MacDonald 68k
Locations • All
Finland, 23 minutes ago
EMBL European Molecular Biology Laboratory, 2 hours ago
The city by the bay, 2 hours ago
Hong Kong, 7 hours ago
Germany, 7 hours ago
Traffic: 1106 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6