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affypara
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affyPara
cdf
affy
affyPara
cdf
affy
affyPara
13.6 years ago
danieladna
▴ 110
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4
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1.2k
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affyPara: background correction & normalization only?
Preprocessing
affy
affyPara
Preprocessing
affy
affyPara
updated 14.2 years ago by
Markus Schmidberger
▴ 380 • written 14.2 years ago by
L L
▴ 30
0
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1
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999
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affypara
cdf
affy
affyPara
cdf
affy
affyPara
updated 13.6 years ago by
Valerie Obenchain
★ 6.8k • written 13.6 years ago by
danieladna
▴ 110
0
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0
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1.0k
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Bioconductor
cdf
affy
affyPara
cdf
affy
affyPara
13.5 years ago
Valerie Obenchain
★ 6.8k
0
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0
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1.0k
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affyPara - rmaPara fails using cdfname
Microarray
affyPara
Microarray
affyPara
11.9 years ago
Wetzels, Yves [JRDBE Extern]
▴ 10
0
votes
0
replies
1.1k
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affyPara - rmaPara fails using cdfname
Microarray
cdf
affyPara
Microarray
cdf
affyPara
11.8 years ago
Tobias Verbeke
▴ 50
0
votes
6
replies
976
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affyPara build error
affyPara
2.2 years ago
starsareintherose
• 0
7 results • Page
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Comment: Differences in differential analysis methods for RNA-Seq
by
ATpoint
★ 4.1k
> I am just re-processing due to being uncertain about how they used the edgeR analysis to reach gene level edgeR devs published something…
Comment: Differences in differential analysis methods for RNA-Seq
by
james.zhang20
• 0
Thanks for the explanations, it has helped clarify some things. Unfortunately, I am working from an early access public dataset (https://do…
Comment: Deseq2 and Normalization of RNA sequencing data
by
ATpoint
★ 4.1k
There is no expectation of normality that is realistic in terms of expression level. Levels are widely different between genes, and counts …
Comment: Differences in differential analysis methods for RNA-Seq
by
ATpoint
★ 4.1k
MAGeCK is a command line tool that is easy to use. I recommend you use it because a) the logFCs from DESeq2 and MAGeCK will be very similar…
Comment: Get genomic coordinates of CpGs sites (chromosomes, genomic position)
by
Yveto
• 0
Thank for your response. It is Illumina 450 K. I use this code ```{r } library(IlluminaHumanMethylation450kanno.ilmn12.hg19) annotat…
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A: Error in DESeqDataSet : some values in assay are not integers
Bioconductor 3.19 is Released!
Bioconductor 3.19 is Released!
Answer: DEseq2 coefficient
SPIA plotP giving error
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