Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
aroma.light
•
reset
0
votes
0
replies
771
views
Definition of some of the columns in PSCBS segmentation file
aroma.light
affiymetrix
SNP6
PSCBS
parent specific copy number
7.0 years ago
vakul.mohanty
▴ 10
0
votes
0
replies
1.5k
views
Help with aroma.light install
aroma.light
aroma.light
9.9 years ago
Luca Braglia
▴ 10
0
votes
2
replies
1.3k
views
package R.oo (or R.00?), within package R.classes, and function robustPca
aroma.light
pcaMethods
aroma.light
pcaMethods
updated 15.6 years ago by
Sean Davis
21k • written 15.6 years ago by
Tillinghast, Guy, M.D.
▴ 30
0
votes
1
reply
855
views
aroma.light advice sought
Microarray
limma
aroma.light
Microarray
limma
aroma.light
updated 15.8 years ago by
Henrik Bengtsson
★ 2.4k • written 15.8 years ago by
Iain Gallagher
▴ 930
0
votes
0
replies
826
views
Combining data from scans at different intensities
limma
aroma.light
limma
aroma.light
17.2 years ago
Gordon Smyth
50k
5 results • Page
1 of 1
Recent ...
Replies
Answer: Deseq2. decontXcounts not integers. Useful alternative?
by
Michael Love
41k
Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…
Answer: ATACseq merge peaks
by
ATpoint
★ 4.0k
That depends on your analysis. Typically, for differential analysis (and convenience) you would produce a single set of peaks (e.g. by merg…
Comment: Deseq2. decontXcounts not integers. Useful alternative?
by
camp
▴ 10
Yes, @atpoint is correct. decontX decontaminated counts are not integers due to the way the variation inference algorithm works, but you ca…
Comment: Deseq2. decontXcounts not integers. Useful alternative?
by
ATpoint
★ 4.0k
I do not know this decontamination tool you use but generally: If these counts are basically "corrected" raw counts in the sense that they'…
Answer: Improving the design matrices vignette in RNAseq123
by
Gordon Smyth
50k
Thanks to Shian Su, we have confirmed that the problem in the design matrices vignette html is caused by a bug in knitr 1.44 (to do with sp…
Votes
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
biomaRt error: database disk image is malformed
Comment: biomaRt : No lock file for BiocFileCache
Answer: Cross-species analysis - how to compute the mid parent value?
Awards
• All
Popular Question
to
James W. MacDonald
65k
Scholar
to
Michael Love
41k
Supporter
to
JKim
• 0
Popular Question
to
Gordon Smyth
50k
Popular Question
to
Chris
• 0
Locations
• All
France,
3 minutes ago
United States,
3 minutes ago
United States,
5 minutes ago
United States,
12 minutes ago
United States,
12 minutes ago
Traffic: 1110 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6