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arrayquality
•
reset
0
votes
6
replies
1.2k
views
Error using arrayQuality and Agilent txt files
arrayQuality
arrayQuality
13.6 years ago
F. Javier López
▴ 30
0
votes
4
replies
1.3k
views
Agilent CGH data
CGH
arrayQuality
marray
CGH
arrayQuality
marray
updated 16.6 years ago by
Sean Davis
21k • written 16.6 years ago by
jhs1jjm@leeds.ac.uk
▴ 230
0
votes
4
replies
1.5k
views
issue in arrayQuality package
hexbin
arrayQuality
hexbin
arrayQuality
19.4 years ago
Longsi Ran
▴ 30
0
votes
3
replies
1.3k
views
maQualityPlots on Mac
GUI
arrayQuality
marray
GUI
arrayQuality
marray
updated 17.7 years ago by
McGee, Monnie
▴ 300 • written 17.7 years ago by
Hervé Pagès
16k
0
votes
3
replies
1.3k
views
bugs in arrayQuality and marray
Normalization
Biobase
hexbin
arrayQuality
marray
Normalization
Biobase
hexbin
arrayQuality
18.4 years ago
Paquet, Agnes
▴ 500
0
votes
3
replies
1.1k
views
problem using arrayQuality package
Normalization
limma
arrayQuality
Normalization
limma
arrayQuality
updated 19.2 years ago by
Paquet, Agnes
▴ 500 • written 19.2 years ago by
Georg Otto
▴ 510
0
votes
2
replies
1.1k
views
problem with arrayQuality in OSX 10.5
arrayQuality
arrayQuality
updated 16.2 years ago by
Christian Kohler
▴ 130 • written 16.2 years ago by
M. Gonzalo Claros Díaz
▴ 50
0
votes
2
replies
1.8k
views
hexbin package installation probs
hexbin
arrayQuality
hexbin
arrayQuality
updated 16.7 years ago by
James W. MacDonald
65k • written 16.7 years ago by
jhs1jjm@leeds.ac.uk
▴ 230
0
votes
1
reply
1.3k
views
arrayQuality: error from maQualityPlots
arrayQuality
updated 9.1 years ago by
Gordon Smyth
50k • written 17.2 years ago by
Bandyopadhyay, Somnath Som
▴ 60
0
votes
1
reply
1.1k
views
Error message when running arrayQuality 1.0.9
arrayQuality
marray
arrayQuality
marray
updated 19.3 years ago by
Paquet, Agnes
▴ 500 • written 19.3 years ago by
Longsi Ran
▴ 10
0
votes
1
reply
1.4k
views
arrayQuality - maQualityPlots - Error: duplicate switch defaults: 'list(dev =...' and ''
arrayQuality
arrayQuality
updated 12.6 years ago by
Martin Morgan
25k • written 12.6 years ago by
Ignacio Lopez De Ullibarri Galparsoro
▴ 20
0
votes
1
reply
883
views
Questions on arrayQuality
Cancer
arrayQuality
Cancer
arrayQuality
updated 19.8 years ago by
Paquet, Agnes
▴ 500 • written 19.8 years ago by
Richard Friedman
★ 2.0k
0
votes
0
replies
1.0k
views
maQualityPlots: cannot coerce type 'S4' to vector of type
arrayQuality
arrayQualityMetrics
arrayQuality
arrayQualityMetrics
10.3 years ago
Agnes Paquet
▴ 30
0
votes
0
replies
871
views
can't get release hexbin source package
GO
hexbin
arrayQuality
GO
hexbin
arrayQuality
19.5 years ago
Darlene Goldstein
▴ 230
0
votes
0
replies
783
views
arrayQuality: Error: recursive default argument reference
arrayQuality
arrayQuality
19.1 years ago
vijayaraj nagarajan
▴ 80
0
votes
0
replies
850
views
maQualityPlots (qpHexbin) question
hexbin
arrayQuality
hexbin
arrayQuality
18.9 years ago
Rob J Goedman
▴ 40
0
votes
0
replies
976
views
RE: maQualityPlots (qpHexbin) question
hexbin
arrayQuality
hexbin
arrayQuality
18.9 years ago
Paquet, Agnes
▴ 500
0
votes
0
replies
872
views
MEEBO-tool in arrayQuality
GO
arrayQuality
GO
arrayQuality
18.1 years ago
Paquet, Agnes
▴ 500
0
votes
0
replies
796
views
I would like to know how to run PRvQCHyb in arrayQuality
arrayQuality
arrayQuality
17.2 years ago
Wonjong Moon
▴ 80
0
votes
0
replies
1.0k
views
ArrayQuality package bug in agQuality function - marray package
Microarray
arrayQuality
Microarray
arrayQuality
15.8 years ago
Marcus Davy
▴ 680
0
votes
0
replies
1.4k
views
arrayQuality - maQualityPlots - Error: duplicate switch defaults: 'list(dev =...' and ''
arrayQuality
arrayQuality
12.9 years ago
Fabio Liberante
▴ 20
0
votes
0
replies
3.4k
views
maQualityPlots: cannot coerce type 'S4' to vector of type 'double'
arrayQuality
arrayQuality
10.3 years ago
Saket Choudhary
▴ 130
0
votes
0
replies
1.1k
views
marray and limma error with lmFit
Microarray
Biobase
DynDoc
widgetTools
limma
arrayQuality
marray
convert
Microarray
DynDoc
17.1 years ago
Paquet, Agnes
▴ 500
23 results • Page
1 of 1
Recent ...
Replies
Answer: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Poonam
• 0
Hi Michael, I think there is something wrong with the generation of nullranges. I was working with small RNA and methylation overlaps. …
Answer: Once again a "Model matrix not full rank"
by
swbarnes2
★ 1.3k
Replicate numbers, like the 1 in control_1 are fine in sample names, but never add them to anything else in colData. From the computer's p…
Answer: limma Intercept vs No-intercept models completely changing DMR results?
by
Gordon Smyth
50k
I'll add a little bit of general advice to James' answer. You seem to have the misunderstanding that you can change the design matrix but …
Answer: package goseq seems to be not available on the latest version of R
by
Gordon Smyth
50k
It is true that goseq isn't available for Bioc 3.19 (as at 4 May 2024). In the meantime, you could consider using the goana() and kegga() …
Answer: limma Intercept vs No-intercept models completely changing DMR results?
by
James W. MacDonald
65k
This part: ``` design_intercept <- model.matrix(~Alt+Sex+Age+PC1, data=targets_Sherpa) colnames(design_intercept) <- c("AltSHP_LA","Al…
Votes
Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-
Answer: limma Intercept vs No-intercept models completely changing DMR results?
Answer: CombineArrays for EPIC and EPIC V2
Answer: Too many significant genes when integrating gtex and tcga
Comment: Too many significant genes when integrating gtex and tcga
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