Showing : arrayquality • reset
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maQualityPlots: cannot coerce type 'S4' to vector of type 'double'
arrayQuality arrayQuality
10.3 years ago Saket Choudhary ▴ 130
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1.8k
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hexbin package installation probs
hexbin arrayQuality hexbin arrayQuality
updated 16.7 years ago by 65k • written 16.7 years ago by ▴ 230
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issue in arrayQuality package
hexbin arrayQuality hexbin arrayQuality
19.4 years ago Longsi Ran ▴ 30
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arrayQuality - maQualityPlots - Error: duplicate switch defaults: 'list(dev =...' and ''
arrayQuality arrayQuality
updated 12.6 years ago by 25k • written 12.6 years ago by ▴ 20
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arrayQuality - maQualityPlots - Error: duplicate switch defaults: 'list(dev =...' and ''
arrayQuality arrayQuality
12.9 years ago Fabio Liberante ▴ 20
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bugs in arrayQuality and marray
Normalization Biobase hexbin arrayQuality marray Normalization Biobase hexbin arrayQuality
18.4 years ago Paquet, Agnes ▴ 500
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arrayQuality: error from maQualityPlots
arrayQuality
updated 9.1 years ago by 50k • written 17.2 years ago by ▴ 60
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maQualityPlots on Mac
GUI arrayQuality marray GUI arrayQuality marray
updated 17.7 years ago by ▴ 300 • written 17.7 years ago by 16k
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Agilent CGH data
CGH arrayQuality marray CGH arrayQuality marray
updated 16.6 years ago by 21k • written 16.6 years ago by ▴ 230
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Error using arrayQuality and Agilent txt files
arrayQuality arrayQuality
13.6 years ago F. Javier López ▴ 30
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Error message when running arrayQuality 1.0.9
arrayQuality marray arrayQuality marray
updated 19.3 years ago by ▴ 500 • written 19.3 years ago by ▴ 10
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marray and limma error with lmFit
Microarray Biobase DynDoc widgetTools limma arrayQuality marray convert Microarray DynDoc
17.1 years ago Paquet, Agnes ▴ 500
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problem using arrayQuality package
Normalization limma arrayQuality Normalization limma arrayQuality
updated 19.2 years ago by ▴ 500 • written 19.2 years ago by ▴ 510
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problem with arrayQuality in OSX 10.5
arrayQuality arrayQuality
updated 16.2 years ago by ▴ 130 • written 16.2 years ago by ▴ 50
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ArrayQuality package bug in agQuality function - marray package
Microarray arrayQuality Microarray arrayQuality
15.8 years ago Marcus Davy ▴ 680
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maQualityPlots: cannot coerce type 'S4' to vector of type
arrayQuality arrayQualityMetrics arrayQuality arrayQualityMetrics
10.3 years ago Agnes Paquet ▴ 30
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976
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RE: maQualityPlots (qpHexbin) question
hexbin arrayQuality hexbin arrayQuality
18.9 years ago Paquet, Agnes ▴ 500
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1
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883
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Questions on arrayQuality
Cancer arrayQuality Cancer arrayQuality
updated 19.8 years ago by ▴ 500 • written 19.8 years ago by ★ 2.0k
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872
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MEEBO-tool in arrayQuality
GO arrayQuality GO arrayQuality
18.1 years ago Paquet, Agnes ▴ 500
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871
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can't get release hexbin source package
GO hexbin arrayQuality GO hexbin arrayQuality
19.5 years ago Darlene Goldstein ▴ 230
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850
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maQualityPlots (qpHexbin) question
hexbin arrayQuality hexbin arrayQuality
18.9 years ago Rob J Goedman ▴ 40
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I would like to know how to run PRvQCHyb in arrayQuality
arrayQuality arrayQuality
17.2 years ago Wonjong Moon ▴ 80
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arrayQuality: Error: recursive default argument reference
arrayQuality arrayQuality
19.1 years ago vijayaraj nagarajan ▴ 80
23 results • Page 1 of 1
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Answer: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Poonam • 0
Hi Michael, I think there is something wrong with the generation of nullranges. I was working with small RNA and methylation overlaps. …
Answer: Once again a "Model matrix not full rank" by swbarnes2 ★ 1.3k
Replicate numbers, like the 1 in control_1 are fine in sample names, but never add them to anything else in colData. From the computer's p…
Answer: limma Intercept vs No-intercept models completely changing DMR results? by Gordon Smyth 50k
I'll add a little bit of general advice to James' answer. You seem to have the misunderstanding that you can change the design matrix but …
Answer: package goseq seems to be not available on the latest version of R by Gordon Smyth 50k
It is true that goseq isn't available for Bioc 3.19 (as at 4 May 2024). In the meantime, you could consider using the goana() and kegga() …
Answer: limma Intercept vs No-intercept models completely changing DMR results? by James W. MacDonald 65k
This part: ``` design_intercept <- model.matrix(~Alt+Sex+Age+PC1, data=targets_Sherpa) colnames(design_intercept) <- c("AltSHP_LA","Al…
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Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-
Answer: limma Intercept vs No-intercept models completely changing DMR results?
Answer: CombineArrays for EPIC and EPIC V2
Answer: Too many significant genes when integrating gtex and tcga
Comment: Too many significant genes when integrating gtex and tcga
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