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vonnachtigall
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Comment: normalization of ChIP-seq data by using the spike-ins or by using total library
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Bogdan
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640
It used to be a question, but I have solved the issue on controlGenes. I do keep the post just in case that somebody else is interested.
g…
Comment: normalization of ChIP-seq data by using the spike-ins or by using total library
by
Bogdan
▴
640
Thank you very much Mike . In the light of the article on spiker : https://spiker.readthedocs.io/en/latest/reference.html where the size fa…
Comment: how can I add a label for granges using the geom_rect ?
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潘晓光
•
0
Thank you so much, I will try it
Answer: NA value in padj but only for certain contrasts
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Michael Love
38k
See the vignette section on NA values.
Answer: normalization of ChIP-seq data by using the spike-ins or by using total library
by
Michael Love
38k
For spike-ins, just use this built in paradigm:
```
dds <- estimateSizeFactors(dds, controlGenes= <names or numeric index of control fe…
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