Bioconductor Bac

Showing : bac • reset

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1.8k

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Microarray Annotation Cancer BAC Microarray Annotation Cancer BAC

updated 15.1 years ago by Sean Davis 21k • written 15.1 years ago by Daniel Brewer ★ 1.9k

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1.1k

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GO BAC GO BAC

updated 17.1 years ago by Sean Davis 21k • written 17.1 years ago by Al Tango ▴ 50

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1.5k

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oligo BAC oligo BAC

updated 17.7 years ago by Sean Davis 21k • written 17.7 years ago by Ian Roberts ▴ 70

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2.0k

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Cancer Organism MANOR oligo CGHcall BAC Cancer Organism MANOR oligo CGHcall BAC

updated 17.8 years ago by Henrik Bengtsson ★ 2.4k • written 17.8 years ago by Daniel Rico ▴ 110

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1.3k

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limma maanova BAC limma maanova BAC

18.9 years ago Gordon Smyth 53k

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2.2k

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CGH BAC CGH BAC

updated 18.9 years ago by Hilmar Berger ▴ 60 • written 18.9 years ago by Federico Abascal ▴ 90

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967

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biomaRt BAC biomaRt BAC

20.2 years ago Steffen Durinck ▴ 420

7 results • Page 1 of 1

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Answer: problem reading bam files into nucleR by James W. MacDonald 68k

The first step is to update to the current versions of R/Bioconductor and try again. It's possible that you have run into a bug that's alre…

Answer: Question about DESeq2 Design for Paired Treatment Study by ATpoint ★ 5.0k

It's a paired analysis so you don't need any patient-specific covariates such as age and sex. What you call batch effect might just be the …

Comment: problem reading bam files into nucleR by efoss ▴ 10

I thought I might be able to track down a problematic line in the bam file by repeatedly splitting the bam file in and then running the co…

Answer: two questions about limma by Gordon Smyth 53k

Answered here: https://support.bioconductor.org/p/16318/

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication? by Ahmed Salah • 0

Thank you very much! will take that into consideration

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Upcoming Ensembl API and data access changes - new blog post available

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?

Answer: Large logFC but somewhat high FDR

Comment: upstream git branches of bioc-release

Awards • All

Commentator to sina.nassiri ▴ 130