Bioconductor Bac

Showing : bac • reset

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1.6k

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Microarray Annotation Cancer BAC Microarray Annotation Cancer BAC

updated 14.3 years ago by Sean Davis 21k • written 14.3 years ago by Daniel Brewer ★ 1.9k

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1.0k

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GO BAC GO BAC

updated 16.3 years ago by Sean Davis 21k • written 16.3 years ago by Al Tango ▴ 50

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1.3k

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oligo BAC oligo BAC

updated 16.9 years ago by Sean Davis 21k • written 16.9 years ago by Ian Roberts ▴ 70

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1.9k

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Cancer Organism MANOR oligo CGHcall BAC Cancer Organism MANOR oligo CGHcall BAC

updated 17.1 years ago by Henrik Bengtsson ★ 2.4k • written 17.1 years ago by Daniel Rico ▴ 110

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1.2k

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limma maanova BAC limma maanova BAC

18.1 years ago Gordon Smyth 52k

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1.9k

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CGH BAC CGH BAC

updated 18.1 years ago by Hilmar Berger ▴ 60 • written 18.1 years ago by Federico Abascal ▴ 90

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871

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biomaRt BAC biomaRt BAC

19.5 years ago Steffen Durinck ▴ 420

7 results • Page 1 of 1

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Comment: how many significant figures are there in DESeq2 output by ATpoint ★ 4.7k

If you want consistency then use a fixed software environment like Docker, wirh fixed code and thresholds that make sense. Rounding to near…

Comment: Compare TCGA-PAAD with GTEx gene expression by Jane • 0

why aren't there any answers?

Comment: Too many significant genes when integrating gtex and tcga by Jane • 0

I encountered the same issue: too many DEGs after limma analysis. It is sad that until today we can still see the paper published where GTE…

Comment: how many significant figures are there in DESeq2 output by Matthew McCormack ▴ 180

Thank you for your reply. It is good to know that cutoff of 0.05 means less than 0.05. My concerns are about consistency and reproducibili…

Comment: DiffBind edgeR normalization --- why are the normalization factors all equal to by ATpoint ★ 4.7k

No, normalization factors from edgeR rather than size factors from DESeq2 are not proportional, it's a different concept and implementation…

Votes

A: Unbalanced experiment with multiple samples from each patient.

Unbalanced experiment with multiple samples from each patient.

Answer: Vertical line at A=0, nothing else, on MA plot

Answer: GSVA Error Code "Calling gsva(expr=., gset.idx.list=., method=., ...) is defunct

Answer: Group-specific condition effects with individuals nested: matrix is not full ra

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