Bioconductor Bacteria

Showing : bacteria • reset

votes

1.0k

views

syntenet Bacteria synteny

updated 22 months ago by Fabricio Almeida-Silva ▴ 40 • written 2.0 years ago by kluongni • 0

votes

replies

2.1k

views

bacteria GO KEEG RNAseq

5.5 years ago liz.marjory • 0

votes

replies

1.6k

views

bacteria evolution population genomics Job

8.3 years ago una.ren • 0

votes

replies

1.9k

views

PhD cancer genomics bacteria pathogens Job

8.7 years ago Daniel Brewer ▴ 100

votes

2.0k

views

summarizeoverlaps bacteria e coli unique reads

updated 9.7 years ago by Valerie Obenchain ★ 6.8k • written 9.7 years ago by as9309 • 0

votes

2.8k

views

bacteria GO enrichment

updated 10.2 years ago by Marc Carlson ★ 7.2k • written 10.2 years ago by ksw ▴ 20

vote

replies

3.8k

views

RNA-seq edgeR estimatedispersions bacteria

10.7 years ago Mauve • 0

7 results • Page 1 of 1

Recent ...

Replies

Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k

I can reproduce this and have opened an issue on the code base https://github.com/Bioconductor/support.bioconductor.org/issues/112

Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k

we can investigate this issue. thank you for bringing it to our attention

Comment: deseq2 filter the low counts by Michael Love 43k

> But within each comparison (contrast), if I trace some DEGs back to the original salmon merged gene counts (or even to normalised counts)…

Comment: deseq2 filter the low counts by empty_mt • 0

Thank you for you suggestion to look at the pre-filtering section in the DESeq2 vignettes - am I missing something? I have 6 treatments, …

Comment: deseq2 filter the low counts by Michael Love 43k

Have you seen this part: https://bioconductor.org/packages/release/bioc/vignettes/DESeq2/inst/doc/DESeq2.html#pre-filtering

Votes

Bioconductor 3.22 Released!

Comment: "Watched Tags" are being erased rather than updated

Comment: deseq2 filter the low counts

Answer: DESeq2 interactions

Answer: Important: Bioconductor Release 3.22 Delayed

Awards • All