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Cancer Genomics Cancer Epigenomics Single-cell RNA-Seq Network theory Job

updated 3.2 years ago by ronniepubg • 0 • written 3.2 years ago by Andrew Teschendorff ▴ 60

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bioinformatician job bioinformatics scientist cancer genomics biostatistics network analysis Job

3.5 years ago marschaefer • 0

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multiassayexperiment summarizedexperiment cancer genomics

3.9 years ago mario.zanfardino ▴ 160

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single cell cancer genomics statistics News

4.1 years ago kieranrcampbell ▴ 50

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genetic epidemiology cancer genomics computational biology biostatistics moffitt cancer center Job

4.2 years ago claudia.lopez-matamoros • 0

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proteomics cancer genomics Job

4.7 years ago Andy Lynch ▴ 100

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R python deep learning machine learning cancer genomics Job

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PhD cancer genomics bacteria pathogens Job

5.2 years ago Daniel Brewer ▴ 90

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computational biology image analysis cancer genomics statistics Job

5.4 years ago Bernd Fischer ▴ 550

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cancer genomics R computational biology bioconductor bioinformatics scientist Job

5.6 years ago weinhold • 0

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Comment: Variance explained (coefficient of determination) in edgeR by Gordon Smyth 45k

The R2 values look completely normal. The median R2 is 10%, which seems somewhat low rather than high. With so many genes, you will natural…

Comment: Variance explained (coefficient of determination) in edgeR by Gemma • 0

Many thanks, that seems to work! However, the estimates tend to be surprisingly high, for many genes R2 being close to 1 (quartiles being…

Answer: EnrichGO not working with db created from annotationhub by Lucía • 0

I've gone through my code and I'm pretty sure the issue is not the code, but that some gene IDs (all the ones that start with LOC) are just…

Comment: DiffBind GreyListChIP error: Error: BiocParallel errors by ksong • 0

Hi Rory, Thank you for your reply! Here is the my `sessionInfo()`: Please let me know what you think. I really appreciate your help! …

Comment: EnrichGO not working with db created from annotationhub by Lucía • 0

I used the gtf file from ncbi Here: https://www.ncbi.nlm.nih.gov/assembly/GCF_900626175.2/ Everything was taken from there

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Answer: Methods for removing unexpressed probes of Human Transcriptome Array HTA 2.0

Answer: Use MulticoreParam under BatchtoolsParam

Answer: Variance explained (coefficient of determination) in edgeR

HTSeq Counts no longer available

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Popular Question to Johannes Rainer ★ 1.9k