Biostar GO enrichment

Showing : GO enrichment • reset

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1.4k

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go enrichment gene ontology goseq go

3.4 years ago Raito92 ▴ 60

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673

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gosemsim go enrichment go semantic similarity

4.2 years ago nooshin ▴ 300

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1.1k

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rnaseq topgo go enrichment

updated 4.2 years ago by James W. MacDonald 62k • written 4.2 years ago by jgg • 0

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1.4k

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clusterprofiler go enrichment functional enrichment

updated 4.2 years ago by Guangchuang Yu ★ 1.2k • written 4.2 years ago by Jack • 0

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822

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topgo ks score kolmogorov-smirnov test go enrichment

updated 4.6 years ago by Lluís Revilla Sancho ▴ 700 • written 4.6 years ago by eagomezc • 0

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604

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goseq go enrichment

4.6 years ago mart1139 • 0

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952

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chipseq go enrichment clusterprofiler

updated 4.9 years ago by Guangchuang Yu ★ 1.2k • written 4.9 years ago by Javier Pérez Florido ▴ 840

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2.8k

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deseq2 goseq rnaseq go enrichment differential gene expression

updated 5.0 years ago by Michael Love 39k • written 5.0 years ago by josef.oeckl • 0

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2.5k

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clusterProfiler GO GO enrichment genesetenrichment

updated 7 months ago by pengmin.wang.1 • 0 • written 5.1 years ago by Huang, Lei [BSD] - CRI ▴ 20

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1.5k

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org.dm.eg.db gene ontology go enrichment annotation NOT

updated 5.9 years ago by Valerie Obenchain ★ 6.7k • written 5.9 years ago by ivozeller • 0

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800

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go enrichment topgo d.ananassae

updated 6.6 years ago by James W. MacDonald 62k • written 6.6 years ago by koeniger ▴ 10

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1.6k

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bacteria GO enrichment

updated 7.5 years ago by Marc Carlson ★ 7.2k • written 7.5 years ago by ksw ▴ 20

12 results • Page 1 of 1

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Comment: mas5calls function doesn't work; mirna40cdf problem by Guido Hooiveld ★ 3.5k

Also: you could consider using `DABG` for present/absent calls. James elaborated on this in this thread: https://support.bioconductor.org/p…

Comment: mas5calls function doesn't work; mirna40cdf problem by James W. MacDonald 62k

Yes. Follow the recommendation in the link that was provided to you by Lori Shepherd.

Comment: mas5calls function doesn't work; mirna40cdf problem by Berna • 0

Thank you for the information. I did not know that. Would you have a tip how I could proceed differently?

Comment: Correct use of Likelihood Ratio Test and LFC Shrinkage by ayabalbaa1990 • 0

Hi Michael, So I use this res_LRT <- results(dds_lrt) r2=lfcShrink(dds_lrt, coef=7, res=res_LRT) tu run lfcshrink with LRT, is that oko?…

Comment: Combat and dds Object by shaimaa • 0

I used the combat-seq but the deseq complain as its not integer what should i do

Votes

Answer: mas5calls function doesn't work; mirna40cdf problem

Issue with bumphunter and TxDb.Hsapiens.UCSC.hg38.knownGene that could be due to S4Vectors or an installation problem

Strand information in a GAlignmentsList object derived from strand-specific paired-end RNA-seq data

A: How to translate FASTA file of DNA sequence to protein sequence using Biostrings

Awards • All

Popular Question to Guido Hooiveld ★ 3.5k

Scholar to James W. MacDonald 62k

Commentator to Michael Love 39k