Biostar GO enrichment

Showing : GO enrichment • reset

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788

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go enrichment gene ontology goseq go

2.3 years ago Raito92 ▴ 50

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replies

516

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gosemsim go enrichment go semantic similarity

3.1 years ago nooshin ▴ 300

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replies

620

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rnaseq topgo go enrichment

updated 3.1 years ago by James W. MacDonald 58k • written 3.1 years ago by jgg • 0

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873

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clusterprofiler go enrichment functional enrichment

updated 3.2 years ago by Guangchuang Yu ★ 1.2k • written 3.2 years ago by Jack • 0

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534

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topgo ks score kolmogorov-smirnov test go enrichment

updated 3.5 years ago by Lluís Revilla Sancho ▴ 650 • written 3.6 years ago by eagomezc • 0

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430

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goseq go enrichment

3.6 years ago mart1139 • 0

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615

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chipseq go enrichment clusterprofiler

updated 3.8 years ago by Guangchuang Yu ★ 1.2k • written 3.8 years ago by Javier Pérez Florido ▴ 840

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2.3k

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deseq2 goseq rnaseq go enrichment differential gene expression

updated 3.9 years ago by Michael Love 35k • written 3.9 years ago by josef.oeckl • 0

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1.8k

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clusterProfiler GO GO enrichment genesetenrichment

updated 4.1 years ago by Guangchuang Yu ★ 1.2k • written 4.1 years ago by Huang, Lei [BSD] - CRI ▴ 20

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1.2k

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org.dm.eg.db gene ontology go enrichment annotation NOT

updated 4.8 years ago by Valerie Obenchain ★ 6.7k • written 4.9 years ago by ivozeller • 0

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658

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go enrichment topgo d.ananassae

updated 5.5 years ago by James W. MacDonald 58k • written 5.5 years ago by koeniger ▴ 10

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1.4k

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bacteria GO enrichment

updated 6.5 years ago by Marc Carlson ★ 7.2k • written 6.5 years ago by ksw ▴ 20

12 results • Page 1 of 1

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Comment: Uniform window size for different genes by rbenel ▴ 20

Hi James, Sorry if I was unclear. I am referring to the height of the model itself, strictly speaking visualization. For publication I wo…

Comment: Macbook M1 install genefilter failed by Ryan • 0

Yes, this solution worked for me as well.

Comment: DiffBind: Values of Called1 and Called2 do not appear to coincide with input pea by Rory Stark ★ 4.3k

Nothing too unusual, just a bug where in certain conditions the `Called` columns were being computed using the unmerged datasets. This onl…

Answer: Unusal standard deviation after rlog transformation and the homoscedasticity of by Michael Love 35k

I'm guessing this data does not conform well to the assumptions of the rlog, which are that variation is distributed a certain way from exp…

Answer: Affymetrix chip which is not listed on this webpage by James W. MacDonald 58k

You can't use the `affy` package for Clariom S arrays, but instead have to use the `oligo` package. I don't believe `affylmGUI` uses `oligo…

Votes

A: What does the relative-log expression normalization mean in the deseq2 wrapper f

What does the relative-log expression normalization mean in the deseq2 wrapper function ?

edgeR cpm() function with and without log2

A: edgeR cpm() function with and without log2

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