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bayespeak
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[bug] BayesPeak cannot deal with RangedData input
BayesPeak
bug
7.8 years ago
balwierz
▴ 40
1
vote
3
replies
1.1k
views
Error in bayespeak function importing data
bayespeak
8.8 years ago
Reed
▴ 10
8
votes
9
replies
6.2k
views
ChIPseq-style peak calling for paired-end sequencing?
Chipseq
DNAseq
ATAC
bayespeak
narrowpeaks
updated 9.0 years ago by
Gordon Smyth
50k • written 9.0 years ago by
samuel collombet
▴ 140
0
votes
8
replies
2.0k
views
chip-seq data
ChIPSeq
chipseq
BayesPeak
ChIPSeq
chipseq
BayesPeak
11.7 years ago
John linux-user
▴ 210
0
votes
1
reply
1.1k
views
Question about ChIPpeakAnno R package
AnnotationData
annotate
ChIPpeakAnno
BayesPeak
AnnotationData
annotate
ChIPpeakAnno
11.8 years ago
Julie Zhu
★ 4.3k
0
votes
1
reply
959
views
Upgrade bioconductor to version 2.6
BayesPeak
BayesPeak
12.7 years ago
Mary Ellen Fitzpatrick
▴ 20
0
votes
7
replies
1.9k
views
error in bayespeak function
ChIPSeq
GO
BSgenome
BSgenome
chipseq
BayesPeak
ChIPSeq
GO
BSgenome
BSgenome
chipseq
updated 12.8 years ago by
Jonathan Cairns
▴ 130 • written 12.8 years ago by
Andreia Fonseca
▴ 810
0
votes
1
reply
1.0k
views
BayesPeak and RangedData obj output
BayesPeak
BayesPeak
updated 13.5 years ago by
Jonathan Cairns
▴ 130 • written 13.5 years ago by
Binbin Liu
▴ 30
0
votes
4
replies
1.6k
views
BayesPeak segfault woes
BayesPeak
BayesPeak
updated 14.0 years ago by
Jonathan Cairns
▴ 130 • written 14.0 years ago by
Tim Rayner
▴ 270
9 results • Page
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Answer: Numerical differences in DESeq2 output depending on different design matrix cons
by
Michael Love
42k
Yes there can be small numerical differences in the estimated quantities because of how the algorithms decide to stop iterating.
Answer: DESeq2- Mysterious interaction suppresses DEGs
by
Michael Love
42k
Removing samples from one group nevertheless changes the variance estimation (dispersion) for all comparisons. So you could have pushed one…
Comment: Ensembl plants at annotationHub?
by
Daniele
• 0
Hi, I'm using Ensembl Plants release 59 with the IWGSC RefSeq v1.1 gene annotation. Thanks a lot for replying so quickly!
Comment: Numerical differences in DESeq2 output depending on different design matrix cons
by
swbarnes2
★ 1.4k
If you restrict yourself to, say, genes with a baseMean > 50, are the numerical differences between the two designs significant?
Comment: DESeq2- Mysterious interaction suppresses DEGs
by
shaunpeterson
• 0
The images I tried to attach didn't attach. Here is the PCA (MDS) of all the samples, with the Cortex outlier highlighed. ![enter image de…
Votes
Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Rsubread counting peaks ATACseq
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Vincent J. Carey, Jr.
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Koen Van den Berge
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shepherl
3.9k
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Johannes Rainer
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