Biostar Beadarraysnp

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crlmm illumina beadarraysnp

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SNP Normalization GO PROcess beadarraySNP SNP Normalization GO PROcess beadarraySNP

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geneplotter affy affyio beadarray quantsmooth beadarraySNP geneplotter affy affyio

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geneplotter affy affyio beadarray quantsmooth beadarraySNP geneplotter affy affyio

updated 15.5 years ago by Mark Dunning ▴ 320 • written 15.5 years ago by Krys Kelly ▴ 270

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geneplotter affy affyio beadarray quantsmooth beadarraySNP geneplotter affy affyio

updated 15.5 years ago by Mark Dunning ▴ 320 • written 15.5 years ago by Johnstone, Alice ▴ 410

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geneplotter affy affyio beadarray quantsmooth beadarraySNP geneplotter affy affyio

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Microarray Annotation geneplotter affy affyio beadarray quantsmooth beadarraySNP affy

updated 15.6 years ago by Matt Ritchie ▴ 460 • written 15.6 years ago by Keith James ▴ 10

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Comment: How to normalize long-read RNA-seq data for comparison with short-reads by Bernardo • 0

Just did that, thank you for the suggestion.

Comment: Empty ChipQC Report by Okan • 0

Hi, I have the same issue. Have you found any solution or any reason why this is happening?

Comment: edgeR: Usage of estimated dispersion from replicates for pools of the same exper by Gordon Smyth 47k

Am I understanding correctly that you have 24 RNA-seq libraries in total, 6 from the pooled samples and 18 from regular samples with biolog…

Comment: edgeR: Usage of estimated dispersion from replicates for pools of the same exper by k.roelfs • 0

I'm sorry, I know it is kinda confusing... We have 6 pools in total: Phenotype A: T1a, T2, T1b, T1c Phenotype B: T1, T2 Each pool consist…

Comment: edgeR: Usage of estimated dispersion from replicates for pools of the same exper by Gordon Smyth 47k

Sorry, I don't understand your experiment. You are reading the edgeR Section on on what to do without replicates, but your experiment appe…

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Comment: How to normalize long-read RNA-seq data for comparison with short-reads

Volcano Plot in R

Answer: Replicating iDEP parameters in DESeq2; two conditions and an interaction term.

Answer: MA plot

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