Biostar Beadarraysnp

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crlmm illumina beadarraysnp

updated 6.3 years ago by Matthew Ritchie ▴ 990 • written 6.3 years ago by René ▴ 30

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SNP Normalization GO PROcess beadarraySNP SNP Normalization GO PROcess beadarraySNP

11.1 years ago Jonas Mandel ▴ 10

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692

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beadarraySNP beadarraySNP

11.9 years ago Boris Umylny ▴ 120

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733

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SNP Normalization Cancer Colon PROcess beadarraySNP copynumber SNP Normalization Cancer

12.1 years ago Dmitri Mouradov ▴ 20

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geneplotter affy affyio beadarray quantsmooth beadarraySNP geneplotter affy affyio

updated 13.7 years ago by Matt Ritchie ▴ 460 • written 13.7 years ago by Elizabeth McClellan ▴ 10

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Biobase annotate affy affyio beadarray quantsmooth beadarraySNP lumi Biobase annotate

13.9 years ago Johnstone, Alice ▴ 410

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709

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geneplotter affy affyio beadarray quantsmooth beadarraySNP geneplotter affy affyio

updated 13.9 years ago by Mark Dunning ▴ 320 • written 13.9 years ago by Krys Kelly ▴ 270

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721

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geneplotter affy affyio beadarray quantsmooth beadarraySNP geneplotter affy affyio

updated 13.9 years ago by Mark Dunning ▴ 320 • written 13.9 years ago by Johnstone, Alice ▴ 410

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952

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geneplotter affy affyio beadarray quantsmooth beadarraySNP geneplotter affy affyio

updated 13.9 years ago by Mike Smith ▴ 40 • written 13.9 years ago by Krys Kelly ▴ 270

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714

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Microarray Annotation geneplotter affy affyio beadarray quantsmooth beadarraySNP affy

updated 14.0 years ago by Matt Ritchie ▴ 460 • written 14.0 years ago by Keith James ▴ 10

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Comment: Research fellow in immunology by ATpoint ▴ 640

Try starting a new R session and then load the package again. If that fails then manually install ellipsis version 0.3.2 or greater. By the…

Answer: Creating the correct model to account for paired-samples (patient-effect) help n by Gordon Smyth 43k

In the limma User's Guide, Section 9.4.1 *Paired Samples* covers paired designs. In the edgeR User's Guide, it is Section 3.4.1.

Comment: How to convert .CEL file to .VCF file? by jesus • 0

Thank you! I'd already seen it, but the problem is that I'm using Windows and I think that code is only for Linux. Thanks anyway!

Comment: DESeq2 codes by Ram ▴ 60

DESeq2 is a piece of software that can be used to find statistically significant differential expression in RNAseq datasets. See: https://b…

Comment: DESeq2 codes by Kevin Blighe 3.1k

Hi, I changed the post type to `Question` (you had posted it as `News`). You mean that you want the raw code for DESeq2? - this can be foun…

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Comment: What is the correct use of removeBatchEffect's design parameter

Answer: DESeq2 for allele-specific expression with contrasts between conditions

C: DESeq2 question about use of DESeqDataSetFromTximport() from RSEM data

Comment: Data input for aracne2regulon function in viper package

Comment: DESeq2: NA's in mcols(object)$betaConv

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