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new window cairo bundle Re: [Rd] R/Sweave/cairo/freetype bug fix.
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10.9 years ago
Hin-Tak Leung
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Agilent Arrays
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18.8 years ago
Naomi Altman
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differences or 1-channel (was Re: Agilent Arrays)
Normalization
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18.9 years ago
Naomi Altman
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Bioconductor Digest, Vol 28, Issue 23
Normalization
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updated 18.9 years ago by
Wolfgang Huber
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Gordon Smyth
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Affymetrix Software Development Conference Early Registration rat es - final days
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21.0 years ago
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Answer: More regions in union when increasing DBA$config$mergeOverlap
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Rory Stark
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I think the documentation is out of sync with the code. Positive values represent gaps between intervals and negative values represent how …
Comment: log2FoldChange value is way too different when compared with counts(dds)
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Michael Love
41k
But just to be clear, this is not the same as regressing out batch from the VST (approx log transformed): ``` limma::removeBatchEffect(cou…
Comment: log2FoldChange value is way too different when compared with counts(dds)
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HAK
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Thank you for the explanation, probably my brain just needed to accumulate enough info to understand what you are saying, but I finally got…
Answer: Getting Error in hclust(d, method = method): NA/NaN/Inf in foreign function call
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ATpoint
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Here the error probably means that you habe genes where expression scross all samples is the same. Rowscaling is value minus mean divided b…
Comment: Store output of matchPWM()
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James W. MacDonald
65k
Here's a self contained reproducible example, using part of the example in `?matchPWM` ``` > library(Biostrings) > data(HNF4alpha) > libr…
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Bioconductor 3.19 is Released!
Answer: DEseq2 coefficient
SPIA plotP giving error
Answer: Fold change calculation in Diffbind vs. DESEQ2?
C: How to establish a subset from TxDb.Hsapiens.UCSC.hg38.knownGene DB
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