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Convert a bed file to bigBed with rtracklayer
bed
bigBed
rtracklayer
ucsc
2.0 years ago
L
▴ 50
2
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1
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1.7k
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rtracklayer BigBed format
ngs
rtracklayer
bigbed
updated 5.9 years ago by
Michael Lawrence
★ 11k • written 5.9 years ago by
foehn
▴ 100
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Comment: Help with RSEM counts: do I transpose matrix?
by
NB
• 0
Thank you. If I have questions about QC/normalization, do I ask them here or ask a new question?
Answer: Help with RSEM counts: do I transpose matrix?
by
James W. MacDonald
67k
Yes. Samples in columns and genes in rows.
Comment: Issues with BSgenome.Mmusculus.UCSC.mm39 and generating motif matrix in Signac (
by
James W. MacDonald
67k
It's not informative except for me to say I was right that it's `getSeq` that is providing the error. It appears that `AddMotifs` is passin…
Answer: Detecting genomic signatures of drug resistance breast cancer in transcriptom
by
James W. MacDonald
67k
This support site is meant to help people with technical questions about using Bioconductor packages. Your question is probably better suit…
Comment: Issues with BSgenome.Mmusculus.UCSC.mm39 and generating motif matrix in Signac (
by
Paul
• 0
This is the traceback I got after running AddMotifs if this is informative? ``` 23: stop(wmsg("trying to load regions beyond the boundaries…
Votes
Answer: Detecting genomic signatures of drug resistance breast cancer in transcriptom
Comment: Issues with BSgenome.Mmusculus.UCSC.mm39 and generating motif matrix in Signac (
Answer: Issues with BSgenome.Mmusculus.UCSC.mm39 and generating motif matrix in Signac (
Comment: does anyone how to create rarefaction curves from a phyloseq object?
Answer: ANOVA like approach of edgeR
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