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bitseq
•
reset
5
votes
18
replies
3.2k
views
Incongruencies between DEXSeq and BitSeq/Cuffdiff
dexseq
bitseq
cuffdiff
Differential exon usage
isoforms
9.0 years ago • updated 8.9 years ago
elle
▴ 10
1
vote
5
replies
1.7k
views
using BitSeq data as input for spliceR
bitseq
spliceR
9.0 years ago
elle
▴ 10
0
votes
2
replies
1.3k
views
BitSeq transcript IDs
Alignment
PROcess
BitSeq
Alignment
PROcess
BitSeq
updated 11.1 years ago by
Maayan Kreitzman
▴ 30 • written 11.1 years ago by
Peter Glaus
▴ 70
0
votes
1
reply
1.1k
views
BitSeq getExpression crash
Alignment
PROcess
BitSeq
Alignment
PROcess
BitSeq
updated 11.1 years ago by
Peter Glaus
▴ 70 • written 11.1 years ago by
Maayan Kreitzman
▴ 30
2
votes
3
replies
1.3k
views
Technical and biological replates in BitSeq
BitSeq
bitseq
rnaseq
updated 8.6 years ago by
Ryan C. Thompson
★ 7.9k • written 8.6 years ago by
Sam McInturf
▴ 300
0
votes
6
replies
1.7k
views
BitSeq input data error
BitSeq
BitSeq
updated 11.5 years ago by
Peter Glaus
▴ 70 • written 11.5 years ago by
Fatemehsadat Seyednasrollah
▴ 260
0
votes
1
reply
973
views
BitSeq: Required input for 3' bias correction on transcripts.
RNASeq
BitSeq
RNASeq
BitSeq
updated 11.3 years ago by
Peter Glaus
▴ 70 • written 11.3 years ago by
Dave Gerrard
▴ 40
0
votes
1
reply
946
views
BitSeq getExpression (type=counts) - (why all 1 or higher)
BitSeq
updated 9.0 years ago by
Antti Honkela
▴ 50 • written 9.0 years ago by
dietmar.pils
• 0
1
vote
1
reply
1.1k
views
BitSeq with paired samples
bitseq
paired samples
updated 8.8 years ago by
panagiotis.papastamoulis
▴ 30 • written 8.8 years ago by
MariaJoseG
• 0
0
votes
0
replies
856
views
SamBit input data error
BitSeq
BitSeq
11.5 years ago
Fatemehsadat Seyednasrollah
▴ 260
0
votes
0
replies
1.0k
views
BitSeq: Required input for 3' bias correction on transcripts.
RNASeq
safe
BitSeq
RNASeq
safe
BitSeq
11.3 years ago
Dave Gerrard
▴ 40
0
votes
0
replies
1.5k
views
Differential expression workflow for alternative splicing
dexseq
bitseq
spliceR
9.0 years ago
elle
▴ 10
0
votes
0
replies
1.1k
views
BitSeq: Required input for 3' bias correction on transcripts.
Transcription
RNASeq
safe
BitSeq
Transcription
RNASeq
safe
BitSeq
11.3 years ago
Peter Glaus
▴ 70
13 results • Page
1 of 1
Recent ...
Replies
Answer: Once again a "Model matrix not full rank"
by
swbarnes2
★ 1.3k
Replicate numbers, like the 1 in control_1 are fine in sample names, but never add them to anything else in colData. From the computer's p…
Answer: limma Intercept vs No-intercept models completely changing DMR results?
by
Gordon Smyth
50k
I'll add a little bit of general advice to James' answer. You seem to have the misunderstanding that you can change the design matrix but …
Answer: package goseq seems to be not available on the latest version of R
by
Gordon Smyth
50k
It is true that goseq isn't available for Bioc 3.19. That is because goseq depends on txbmaker, which is itself not yet available for Bioc…
Answer: limma Intercept vs No-intercept models completely changing DMR results?
by
James W. MacDonald
65k
This part: ``` design_intercept <- model.matrix(~Alt+Sex+Age+PC1, data=targets_Sherpa) colnames(design_intercept) <- c("AltSHP_LA","Al…
Comment: CombineArrays for EPIC and EPIC V2
by
Kim
• 0
Thank you Tim, this is a great help in getting me started!
Votes
Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-
Answer: limma Intercept vs No-intercept models completely changing DMR results?
Answer: CombineArrays for EPIC and EPIC V2
Answer: Too many significant genes when integrating gtex and tcga
Comment: Too many significant genes when integrating gtex and tcga
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