Showing : cBioPortalData • reset
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cBioPortalData loads empty z-score expression table
cBioPortalData
updated 20 months ago by 700 • written 20 months ago by • 0
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577
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loadstudy and cBioDataPack return error in vroom_
cBioPortalData
2.2 years ago karam • 0
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5
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1.9k
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R-API Quick Select?
cBioPortalData
3.3 years ago ryan.hagenson • 0
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5
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2.1k
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Filter Mutations?
RaggedExperiment cBioPortalData
updated 3.3 years ago by 700 • written 3.3 years ago by • 0
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clinicalData() is not returning all columns from cBioPortal
cBioPortalData
updated 2.4 years ago by ▴ 20 • written 4.6 years ago by • 0
2
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1.7k
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Error following instructions of CBioportal R-workshop example 2
MultiAssayExperiment cBioPortalData
updated 4.6 years ago by ★ 4.0k • written 4.6 years ago by • 0
6 results • Page 1 of 1
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Comment: GOseq Probability Weight Function bad fit by ejasge.r.m • 0
When performing GO analysis with GOseq, i s important to carefully check your input and assumptions, just like reviewing choices on the McD…
Answer: problem reading bam files into nucleR by James W. MacDonald 68k
The first step is to update to the current versions of R/Bioconductor and try again. It's possible that you have run into a bug that's alre…
Answer: Question about DESeq2 Design for Paired Treatment Study by ATpoint ★ 5.0k
It's a paired analysis so you don't need any patient-specific covariates such as age and sex. What you call batch effect might just be the …
Comment: problem reading bam files into nucleR by efoss ▴ 10
I thought I might be able to track down a problematic line in the bam file by repeatedly splitting the bam file in and then running the co…
Answer: two questions about limma by Gordon Smyth 53k
Answered here: https://support.bioconductor.org/p/16318/
Votes
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
Comment: upstream git branches of bioc-release
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