Bioconductor Canis familiaris

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genomeinfodb canis familiaris

updated 8.9 years ago by Hervé Pagès 16k • written 8.9 years ago by Robert Castelo ★ 3.4k

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RNASeq Genetics Annotation Canis familiaris gage RNASeq Genetics Annotation gage

updated 10.4 years ago by James W. MacDonald 67k • written 10.4 years ago by Jessica Perry Hekman ▴ 140

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genomicfeatures txdb canis familiaris rna-seq

updated 7.5 years ago by James W. MacDonald 67k • written 7.5 years ago by jggomeza • 0

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Answer: Need help interpreting heatmaps from limma by James W. MacDonald 67k

Heatmaps don't do any comparisons. They just plot the underlying data in a matrix and color the blocks based (in your case) on the by-gene …

Comment: Are transformed values from rlog /vst log2 normalized counts? by Eva ▴ 10

I understood exactly what you said, but I got confused with the documentation and the info that gives about rlog because it seems to be tha…

Answer: featureCounts fails to load annotation file by James W. MacDonald 67k

I imagine Wei Shi will be along later with actual help, but for now do note that you can use an SAF file instead of a GTF. It's easy enough…

Comment: Error for AnnotationForge makeOrgPackageFromNCBI function by James W. MacDonald 67k

That error indicates that you have a file called NCBI.sqlite in your working directory that is missing some tables. You should delete that …

Comment: Are transformed values from rlog /vst log2 normalized counts? by James W. MacDonald 67k

The `DESeq2` package is meant to analyze count data! Most packages that are intended to be used for RNA-Seq data are going to want the raw …

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Scholar to James W. MacDonald 67k