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Comment: Easiest way to convert read10xMolInfo data into a dataframe in R with gene label
by
daldabrown9
• 0
> Initially posted to > https://github.com/MarioniLab/DropletUtils/issues/104 [paybyplate][1] Great solution. It solved my problem. Thanks…
Answer: Zero intra-block correlation in RRBS analysis using voomLmFit with block
by
Gordon Smyth
51k
Thanks for pointing out this issue. Yes, the fact that limma is using sample effects to convert the count data into proportion data means t…
Comment: New to Deseq2 - DEG questions / MA plot
by
ATpoint
★ 4.5k
More generally, vignettes of tools and packages are always at the front page of their `browseVignettes("DESeq2")`.
Answer: Analysis of large RNA-Seq Datasets
by
ATpoint
★ 4.5k
You can take inspiration from this GitHub repo of the developer towards using RUVseq (https://github.com/mikelove/preNivolumabOnNivolumab) …
Answer: Analysis of large RNA-Seq Datasets
by
Dario Strbenac
★ 1.5k
If you have trust in housekeeping genes, [RUVg][1] will do the trick. However, the ultimate way is technical replicates across batches. …
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Answer: DESeq2 - interactions when using factors concatenated into group
A: Understanding interactions in DESeq2
Answer: Automatically generate contrasts from a model matrix / formula
Answer: Automatically generate contrasts from a model matrix / formula
Comment: Bioconductor 3.20 Release Schedule
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