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Comment: Question about using LRT test for time course experiments with DESeq2
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James W. MacDonald
67k
You don't want to add a logFC on top like that, as it invalidates the p-value.
Maybe I wasn't clear before. The LRT gives you all the gene…
Comment: Question about using LRT test for time course experiments with DESeq2
by
Denise
•
0
Hi James,
Thank you very much for your very detailed explanation!
I guess my question is simpler than that, I just want to union, across…
Answer: featureCounts segmentation fault with large chromosomes
by
vkkodali
▴
10
Thanks to @yangliao this issue is fixed in subread v2.0.8
Comment: Supercells with Basilisk fails for dtype('float64') to dtype('int64') conversion
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ATpoint
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4.5k
For the general audience, reticulate / python (which basilisk depends on / wraps) requires explicit declaration of integers, so one needs i…
Answer: Average expression of genes across replicates
by
ATpoint
★
4.5k
Not sure what you're asking. The average expression across all samples is what the `baseMean` column of `results()` returns. This is simply…
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