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chip
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use diffbind with normilized bedgraph files from spike ins
diffbind
chip-seq
chip
spike
spike-ins
updated 4.4 years ago by
Rory Stark
★ 5.2k • written 4.5 years ago by
Theo
▴ 10
5
votes
7
replies
2.5k
views
ChIPSeeker enrichPeakOverlap external dataset downloads
chipseeker
chipseq
chip
updated 6.9 years ago by
Guangchuang Yu
★ 1.2k • written 6.9 years ago by
rbronste
▴ 60
1
vote
5
replies
1.7k
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Coerce several Granges objects to a GrangeList
GRanges
GRangesList
ChIP
10.1 years ago
patrick.schordert
▴ 30
3 results • Page
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Comment: Question about using LRT test for time course experiments with DESeq2
by
Denise
• 0
Not really, we are testing some toxic compounds to identify genes that are activated in response to the toxic exposure. Genes that change o…
Comment: Combining RNAseq and microarray data using edgeR/limma-voom
by
Adam Marstrand
• 0
Hi again, Thank you for the response! Can you expound on why it is not a good idea? I realize that the expression levels/differential expr…
Answer: Combining RNAseq and microarray data using edgeR/limma-voom
by
James W. MacDonald
67k
No, that's not a good idea at all. You should be doing a meta-analysis with these data rather than trying to combine like that. `GeneMeta` …
Answer: GOstats kegg analysis in wheat - help - none of the objects in the first column
by
James W. MacDonald
67k
Check the help page for `KEGGFrame`. Your columns are out of order.
Comment: Question about using LRT test for time course experiments with DESeq2
by
James W. MacDonald
67k
You are testing the interaction, so you are asking for those genes that change at any time *differently, depending on the treatment*. If co…
Votes
Answer: DecideTest vs topTAGs in edgeR
Comment: DESeq Input from Salmon + tximport/tximeta
Comment: DESeq Input from Salmon + tximport/tximeta
Comment: DESeq Input from Salmon + tximport/tximeta
Answer: DESeq Input from Salmon + tximport/tximeta
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