Bioconductor Spike-ins

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DiffBind Chipseq spike-ins

updated 2.9 years ago by Rory Stark ★ 5.0k • written 3.9 years ago by Konstantin Okonechnikov ▴ 40

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diffbind chip-seq chip spike spike-ins

updated 3.3 years ago by Rory Stark ★ 5.0k • written 3.4 years ago by Theo • 0

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Comment: List of Deprecated Packages for Bioc3.18 by Hervé Pagès 16k

Also the source package is not available [in BioC 3.17](https://bioconductor.org/packages/3.17/CancerInSilico) which means that the package…

Answer: DelayedArray::read_sparse_block by Hervé Pagès 16k

Hi Koki, Sorry again for the slow response. `read_sparse_block()` has been around for years. It's a generic function defined in the *…

Comment: Speeding up of DelayedArray::write_block() by Hervé Pagès 16k

Sorry for missing that one too. When writting blocks to an HDF5 file, the `write_block()` method for HDF5RealizationSink or TENxRealizatio…

Comment: Speeding up of DelayedArray::write_block() by Hervé Pagès 16k

Hi Koki, sorry for not seeing this before. > will SparseArraySeed in DelayedArray be replaced by this new sparse array format? Yes it wil…

Comment: Manual creation of qPCRset does not work by Ed Siefker ▴ 230

Thanks! This works for me.

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Comment: List of Deprecated Packages for Bioc3.18

Answer: Manual creation of qPCRset does not work

Answer: MDS plot edgeR

A: legend with gradient in ComplexHeatmap

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