Showing : spike-ins • reset
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Integrating the computed spike-in coefficients for the normalisation before differential peaks analysis
DiffBind Chipseq spike-ins
updated 10 months ago by ★ 4.1k • written 22 months ago by ▴ 30
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use diffbind with normilized bedgraph files from spike ins
diffbind chip-seq chip spike spike-ins
updated 15 months ago by ★ 4.1k • written 16 months ago by • 0
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Comment: EdgeR, tumor normal pair, no replicatie but multiple patients, to focus on indi by Field -Ye • 0
Hi Professor Smyth, Thank you for pointing me to your previous publication. I went through the verbal part and found you did pursue the DG…
Comment: Macbook M1 install genefilter failed by Michael Love 34k
Try [n] to updating packages, and "no" to install from source.
Comment: Macbook M1 install genefilter failed by Alexandre • 0
Hi Michael, Sure > BiocManager::install("DESeq2") 'getOption("repos")' replaces Bioconductor standard repositories, see '?re…
Comment: Returning to edgeR version 3.26.1? by Mike Smith ★ 5.1k
I'll just advertise that anyone who wishes can check the changes by visiting https://code.bioconductor.org/browse/edgeR/commits/RELEASE_3_9…
Comment: Returning to edgeR version 3.26.1? by Gordon Smyth 43k
Dear James, We **absolutely** do not not make changes to edgeR results or syntax within a Bioconductor release. The only changes made to e…
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Answer: Degust: what normalization method does it use
Answer: ylim and xlim in Enhanced Volcano
Answer: EdgeR, tumor normal pair, no replicatie but multiple patients, to focus on indi
Error in .rowNamesDF<-(x, value = value) :duplicate row.names are not allowed DESeq2
Comment: How to build a GRangesList where each GRanges element is a CDS coordinate of gen
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