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chipenrich
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Unable to find an inherited method for function distanceToNearest for signature GRanges
chipenrich
granges
distancetonearest
function
dataframe
6.5 years ago
rbronste
▴ 60
1
vote
1
reply
763
views
Chipenrich expected fit line
chipenrich
updated 6.5 years ago by
rcavalca
▴ 140 • written 6.6 years ago by
rbronste
▴ 60
1
vote
1
reply
878
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Error with mappability argument
chipenrich
updated 7.0 years ago by
rcavalca
▴ 140 • written 7.0 years ago by
Ashley.Sawle
• 0
1
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2
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1.1k
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chipenrich mm10 error
chipenrich
updated 7.2 years ago by
rcavalca
▴ 140 • written 7.2 years ago by
jamie.gearing
▴ 60
0
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0
replies
872
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chipenrich - Error in .simpleInheritanceGeneric(fdef)
chipenrich
7.6 years ago
Pierre-François Roux
• 0
0
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0
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2.4k
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DiffBind annotation
Annotation
ChIPpeakAnno
DiffBind
chipenrich
9.6 years ago
Rory Stark
★ 5.2k
6 results • Page
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Comment: Get genomic coordinates of CpGs sites (chromosomes, genomic position)
by
Yveto
• 0
Thank for your response. It is Illumina 450 K. I use this code ```{r } library(IlluminaHumanMethylation450kanno.ilmn12.hg19) annotat…
Answer: More regions in union when increasing DBA$config$mergeOverlap
by
Rory Stark
★ 5.2k
I think the documentation is out of sync with the code. Positive values represent gaps between intervals and negative values represent how …
Comment: log2FoldChange value is way too different when compared with counts(dds)
by
Michael Love
41k
But just to be clear, this is not the same as regressing out batch from the VST (approx log transformed): ``` limma::removeBatchEffect(cou…
Comment: log2FoldChange value is way too different when compared with counts(dds)
by
HAK
• 0
Thank you for the explanation, probably my brain just needed to accumulate enough info to understand what you are saying, but I finally got…
Answer: Getting Error in hclust(d, method = method): NA/NaN/Inf in foreign function call
by
ATpoint
★ 4.1k
Here the error probably means that you habe genes where expression scross all samples is the same. Rowscaling is value minus mean divided b…
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A: Error in DESeqDataSet : some values in assay are not integers
Bioconductor 3.19 is Released!
Bioconductor 3.19 is Released!
Answer: DEseq2 coefficient
SPIA plotP giving error
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