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distancetonearest
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distanceToNearest
rtracklayer
ranges
distanceToNearest
3 months ago
robjohn70000
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SOLVED. finding distance to nearest neighbour (non-self) within a list in GenomicRanges
GenomicRanges
GenomicFeatures
grange
distanceToNearest
R
4.5 years ago
rmash
▴ 20
0
votes
1
reply
1.0k
views
GenomicRanges distanceToNearest: trouble replicating snp-gene mapping from older version
GenomicRanges
distancetonearest
strandedness
updated 6.1 years ago by
Valerie Obenchain
★ 6.8k • written 6.1 years ago by
shraddha.pai
• 0
2
votes
5
replies
1.2k
views
DistanceToNearest Not giving nearest Range
GRanges
distancetonearest
updated 6.4 years ago by
Julie Zhu
★ 4.3k • written 6.4 years ago by
chitsazanalex
▴ 10
0
votes
5
replies
4.5k
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Unable to find an inherited method for function distanceToNearest for signature GRanges
chipenrich
granges
distancetonearest
function
dataframe
6.5 years ago
rbronste
▴ 60
1
vote
14
replies
1.9k
views
DistanceToNearest() error: 'nLnode' and 'nRnode' must be single integers
genomicranges
DistanceToNearest
updated 7.6 years ago by
Valerie Obenchain
★ 6.8k • written 7.7 years ago by
roladali
▴ 20
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Answer: More regions in union when increasing DBA$config$mergeOverlap
by
Rory Stark
★ 5.2k
I think the documentation is out of sync with the code. Positive values represent gaps between intervals and negative values represent how …
Comment: log2FoldChange value is way too different when compared with counts(dds)
by
Michael Love
41k
But just to be clear, this is not the same as regressing out batch from the VST (approx log transformed): ``` limma::removeBatchEffect(cou…
Comment: log2FoldChange value is way too different when compared with counts(dds)
by
HAK
• 0
Thank you for the explanation, probably my brain just needed to accumulate enough info to understand what you are saying, but I finally got…
Answer: Getting Error in hclust(d, method = method): NA/NaN/Inf in foreign function call
by
ATpoint
★ 4.1k
Here the error probably means that you habe genes where expression scross all samples is the same. Rowscaling is value minus mean divided b…
Comment: Store output of matchPWM()
by
James W. MacDonald
65k
Here's a self contained reproducible example, using part of the example in `?matchPWM` ``` > library(Biostrings) > data(HNF4alpha) > libr…
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Answer: DEseq2 coefficient
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C: How to establish a subset from TxDb.Hsapiens.UCSC.hg38.knownGene DB
C: Extremely big genes in annotation TxDb packages
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