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circos
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Larger values masking others for OmicCircos heatmap
differential gene expression
heatmap
Circos
omiccircos
9.3 years ago
Peter.Wood
• 0
0
votes
0
replies
928
views
Omiccircos: how to draw a circos plot for non-model organisms
omiccircos
seganglepo
sim.circos
circos
6.7 years ago
Didi
▴ 10
0
votes
1
reply
842
views
package circlize: How to extend circos plot?
circlize
circos
3.8 years ago
Brian Smith
▴ 120
0
votes
1
reply
831
views
R circlize package problem with drawing histogram
circlize
R
Circos
Plots
4.1 years ago
marvel479
• 0
1
vote
1
reply
643
views
Visualizing Orthologs and Paralogs genes
Orthologs
Paralogs
porthomcl
circos
visualizing
updated 4.9 years ago by
James W. MacDonald
65k • written 5.0 years ago by
mictadlo
▴ 10
0
votes
0
replies
552
views
Need help in plotting RNA-seq foldchange values in circos plot
Circos
updated 2.6 years ago by
Michael Love
41k • written 2.6 years ago by
pooja
• 0
6 results • Page
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Comment: Deseq2 and Normalization of RNA sequencing data
by
ATpoint
★ 4.1k
There is no expectation of normality that is realistic in terms of expression level. Levels are widely different between genes, and counts …
Comment: Differences in differential analysis methods for RNA-Seq
by
ATpoint
★ 4.1k
MAGeCK is a command line tool that is easy to use. I recommend you use it because a) the logFCs from DESeq2 and MAGeCK will be very similar…
Comment: Get genomic coordinates of CpGs sites (chromosomes, genomic position)
by
Yveto
• 0
Thank for your response. It is Illumina 450 K. I use this code ```{r } library(IlluminaHumanMethylation450kanno.ilmn12.hg19) annotat…
Answer: More regions in union when increasing DBA$config$mergeOverlap
by
Rory Stark
★ 5.2k
I think the documentation is out of sync with the code. Positive values represent gaps between intervals and negative values represent how …
Comment: log2FoldChange value is way too different when compared with counts(dds)
by
Michael Love
41k
But just to be clear, this is not the same as regressing out batch from the VST (approx log transformed): ``` limma::removeBatchEffect(cou…
Votes
A: Error in DESeqDataSet : some values in assay are not integers
Bioconductor 3.19 is Released!
Bioconductor 3.19 is Released!
Answer: DEseq2 coefficient
SPIA plotP giving error
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