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omiccircos
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612
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Question about OmicCircos
OmicCircos
6.0 years ago
ch8316f5eyu
• 0
0
votes
0
replies
909
views
Synteny plots with OmicCircos or Rcircos
omiccircos
rcircos
6.6 years ago
mictadlo
▴ 10
0
votes
0
replies
917
views
Omiccircos: how to draw a circos plot for non-model organisms
omiccircos
seganglepo
sim.circos
circos
6.6 years ago
Didi
▴ 10
2
votes
3
replies
3.4k
views
Making a circos plot to show expression for a gene set rather than whole genome
Gene set
gene set analysis
omiccircos
updated 6.7 years ago by
yifangt
▴ 20 • written 9.3 years ago by
Peter.Wood
• 0
0
votes
0
replies
1.2k
views
OmicCircos: included UCSC.hg19.chr dataframe is actually hg18 cytobands
omiccircos
bug
hg19
hg18
data
7.0 years ago
matthew.bashton
• 0
0
votes
1
reply
1.5k
views
Circos Tile colors
OmicCircos
RCircos
updated 7.0 years ago by
bernatgel
▴ 150 • written 7.0 years ago by
Radek
▴ 90
0
votes
1
reply
2.3k
views
OmicCircos - Error in 1:scale.n : NA/NaN argument
OmicCircos
7.1 years ago
Stefan Langenberg
• 0
0
votes
0
replies
1.1k
views
OmicCircos Error in Colnames attribute mus be the same length as the vector
r
omiccircos
7.2 years ago
theobroma22
▴ 10
0
votes
0
replies
1.3k
views
OmicCircos barplot height and scale
omiccircos
7.3 years ago
Miss Agnieszka Aleksandra Golicz
▴ 40
0
votes
0
replies
731
views
OmicCircos for non human genomes
omiccircos
rnaseq
plants
7.3 years ago
Didi
▴ 10
0
votes
0
replies
841
views
Zoom function in OmicCircos
OmicCircos
Zoom
7.3 years ago
abmora
• 0
0
votes
0
replies
757
views
How to plot a single segment using OmicCircos?
omiccircos
7.7 years ago
Shambho
• 0
1
vote
0
replies
763
views
the 23re and 24th segs cannot be plotted
OmicCircos
7.8 years ago
magcj89
▴ 10
3
votes
2
replies
2.5k
views
How to represent a relationship between physical map and linkage map of a sequenced data using OmicCircos or another similar
omiccircos
software R
bioconductor for genomic data science
linkage disequilibrium
updated 8.1 years ago by
Hu, Ying NIH/NCI [E]
▴ 50 • written 8.1 years ago by
pertille
• 0
0
votes
0
replies
1.3k
views
Can OmicCircos handle chicken ChIA-PET interactome?
OmicCircos
chicken
8.3 years ago
Gary
▴ 20
0
votes
0
replies
1.4k
views
Circos Styling plots is now easy with canceR package
canceR
visualization
omiccircos
8.9 years ago
kmezhoud
▴ 10
0
votes
0
replies
1.3k
views
News:
OmicCircos was updated
visualization
omiccircos
News
9.1 years ago
Hu, Ying NIH/NCI [E]
▴ 50
1
vote
3
replies
1.5k
views
OmicCircos mapping data file.
omiccircos
updated 9.1 years ago by
Hu, Ying NIH/NCI [E]
▴ 50 • written 9.5 years ago by
abdul rawoof
▴ 60
0
votes
1
reply
1.7k
views
extdata missing for non-human OmicCircos plots?
OmicCircos
updated 9.1 years ago by
Hu, Ying NIH/NCI [E]
▴ 50 • written 9.5 years ago by
micahgearhart
• 0
0
votes
2
replies
1.9k
views
How to specifiy colors for polygon links when using circos function of OmicCircos package
graph
omiccircos
updated 9.2 years ago by
Hu, Ying NIH/NCI [E]
▴ 50 • written 9.2 years ago by
wei.shen
• 0
0
votes
1
reply
1.3k
views
Larger values masking others for OmicCircos heatmap
differential gene expression
heatmap
Circos
omiccircos
9.3 years ago
Peter.Wood
• 0
21 results • Page
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Comment: Which input file is used for DGEList in EgdeR?
by
Michael Love
41k
"gene_counts_length_scaled.tsv file generated by the nf-core be exactly that?" No that is the counts scaled by the length. Counts + offset…
Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa
by
Michael Love
41k
These genes are fine. They are just the ones where, by chance, the sample variance is below the sample mean. It happens. DESeq2 brings thes…
Comment: DEG with low counts
by
Michael Love
41k
These counts are too low, only a few samples above a count of 10. So for typical RNA-seq data that is underpowered to call differences. It…
Comment: DESeq filtering specific to contrasts
by
Michael Love
41k
If the counts are too low it in one group then you can't make the comparison either way (whether they are filtered out or just under-powere…
Comment: Estimating Cell Counts for EPIC V2 array data
by
normawiedman059
• 0
0 [103] spam_2.9-1 doParallel_1.0.17 iterators_1.0.14 [106] foreach_1.5.2 beeswarm_0.4.0 tgp_2.4-20 [109] beanplot_1.3.1 fpc_2.2-9 dbscan_1…
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A: Docker container with bioconductor and devtools
Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
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