Bioconductor Clinical data

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TCGAbiolinks days_to_death clinical data missing column

updated 4.5 years ago by Tiago Chedraoui Silva ▴ 260 • written 4.5 years ago by Talip Zengin ▴ 10

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Answer: how to extract specific gene coordinates by passing a list of genes using homo by James W. MacDonald 63k

``` > subset(transcripts(Homo.sapiens, columns = "SYMBOL"), SYMBOL == "BRCA2") 'select()' returned 1:1 mapping between keys and columns …

Answer: tximport error: vroom by Michael Love 40k

Check that they all have same number of lines. I guess one of them was interrupted while writing out and may need to be re-run (Salmon).

Comment: tximport error: vroom by Kevin Blighe 3.8k

Cross-posted: https://www.biostars.org/p/9576578/

Comment: Exporting DESeq2 filtered results by James W. MacDonald 63k

I am interested to know what part of my response you found rude. I asked nicely that you don't add to ancient posts, said your post isn't r…

Comment: Speeding up of DelayedArray::write_block() by Hervé Pagès 16k

> I can imagine writing a sparse high-dimensional array in HDF5, but I'm still not sure how to implement the part where it is read and imme…

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Comment: Speeding up of DelayedArray::write_block()

Answer: Error MakeOrgPackagefromNCBI

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