updated 3.8 years ago by
Tiago Chedraoui Silva
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written 3.8 years ago by
Talip Zengin
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Comment: mas5calls function doesn't work; mirna40cdf problem
by
James W. MacDonald
62k
Yes. Follow the recommendation in the link that was provided to you by Lori Shepherd.
Comment: mas5calls function doesn't work; mirna40cdf problem
by
Berna
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0
Thank you for the information. I did not know that. Would you have a tip how I could proceed differently?
Comment: Correct use of Likelihood Ratio Test and LFC Shrinkage
by
ayabalbaa1990
•
0
Hi Michael,
So I use this
res_LRT <- results(dds_lrt)
r2=lfcShrink(dds_lrt, coef=7, res=res_LRT)
tu run lfcshrink with LRT, is that oko?…
Comment: Combat and dds Object
by
shaimaa
•
0
I used the combat-seq but the deseq complain as its not integer what should i do
Answer: Different summary() and results() values in DeSeq2
by
Basti
▴
540
summary() tells you the number of genes with low counts, see independant filtering of results in the DESeq2 vignette : https://www.biocondu…
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