Bioconductor Cma

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1.7k

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Classification CMA Classification CMA

updated 10.4 years ago by Sean Davis 21k • written 10.4 years ago by Guest User ★ 13k

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CMA CMA

11.1 years ago Guest User ★ 13k

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CMA DiffBind CMA DiffBind

12.4 years ago Paolo Kunderfranco ▴ 350

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1.2k

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Cancer CMA DiffBind Cancer CMA DiffBind

updated 12.4 years ago by Gordon Brown ▴ 70 • written 12.4 years ago by Paolo Kunderfranco ▴ 350

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1.2k

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CMA DiffBind CMA DiffBind

updated 12.4 years ago by Gordon Brown ▴ 70 • written 12.4 years ago by Paolo Kunderfranco ▴ 350

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1.4k

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lumi CMA lumi CMA

updated 12.4 years ago by Moshe Olshansky ▴ 260 • written 12.4 years ago by Paolo Kunderfranco ▴ 350

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1.1k

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Microarray CMA Microarray CMA

updated 13.5 years ago by Tim Triche ★ 4.2k • written 13.5 years ago by Clara Pons ▴ 30

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Microarray Classification limma CMA Microarray Classification limma CMA

13.9 years ago Santosh Patnaik ▴ 30

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974

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CMA CMA

14.6 years ago Mike Dewar ▴ 60

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1.4k

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Classification CMA Classification CMA

14.9 years ago Javier Pérez Florido ▴ 840

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1.2k

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CMA CMA

updated 15.1 years ago by Vincent J. Carey, Jr. 6.7k • written 15.1 years ago by Paul Shannon ★ 1.1k

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1.2k

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Classification CMA Classification CMA

updated 15.2 years ago by Stephen Henderson ▴ 10 • written 15.2 years ago by Juan C Oliveros Collazos ▴ 190

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Microarray Classification Regression limma CMA Microarray Classification Regression limma

15.8 years ago Renaud Gaujoux ▴ 170

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1.2k

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CMA CMA

updated 15.9 years ago by Patrick Aboyoun ★ 1.6k • written 15.9 years ago by Ortiz, Maria ▴ 10

14 results • Page 1 of 1

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Answer: Cross-validation with multiple control subgroups in limma by Gordon Smyth 52k

limma doesn't do cross-validation or resampling. Like most classical linear modeling procedures in statistics, limma uses a statistical mod…

Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio by Robert Castelo ★ 3.4k

Hi Hervé, thank you very much for your input into how to properly build and manage TxDb objects. gDNAx has two main inputs, one or more BAM…

Comment: Biostrings: Error writing long reads (>200 kbps) with writeQualityScaledXStringS by Aidan ▴ 60

Quick update: this is fixed in a branch awaiting PR to Biostrings (https://github.com/Bioconductor/Biostrings/pull/122). Should be in `deve…

Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings? by Michael Love 43k

For statistical analysis plans, I recommend working with a local statistician or someone familiar with linear models in R. I have to reserv…

Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K? by xiaofeiwang198266 • 0

Thanks for your reply!

Votes

C: edgeR and lack of counts ID on CPM matrix

A: DESeq2 Following RSEM

A: importing RSEM data into DESeq2

A: Expected counts from RSEM in DESeq2

A: Using RSEM reads for DESeq2

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