Biostar Constand

Showing : constand • reset

1

vote

2

replies

314

views

CONSTANd newpackage

updated 3 months ago by guido.barzaghi • 0 • written 6 months ago by joris.vanhoutven ▴ 10

1 result • Page 1 of 1

Recent ...

Replies

Comment: VST transformation and covariates in the TCGA TARGET GTEx dataset by Michael Love 34k

Agree, noting just that "poscounts" is used quite a bit and fast (also it has been benchmarked in publications a few times). "iterate" is k…

Answer: VST transformation and covariates in the TCGA TARGET GTEx dataset by josephbrown • 0

Regarding your "every gene contains at least one zero" error: I think when you run `vst()`, it will estimate size factors if they're not…

Comment: Combining two groups in contrast deseq2 by Michael Love 34k

I'd recommend you collaborate with a local statistician to help come up with an appropriate contrast for various hypotheses.

Comment: Reading vcf file with readVcf by aurelien.dejode • 0

Hi, Thanks for the comment. I updated R and Bioconductor, here is the sessionInfo() sessionInfo() R version 4.1.1 (2021-08-10) Platform: …

Comment: MSstatsPTM - Maxquant - MaxQtoMSstatsPTMFormat - Phosphorylation by kohler.d • 0

Hey Terry, Does your Maxquant data include the `Positions.within.proteins` column? It seems like it might not be available based on the er…

Votes

How does DESeq2 handle zero counts in one condition?

The calculation of regularized logarithm

Comment: oligo package blas error

Answer: Combining two groups in contrast deseq2

Awards • All

Scholar to Mike Smith ★ 5.1k

Scholar to Gordon Smyth 43k

Popular Question to Dario Strbenac ★ 1.5k

Popular Question to Hans-Ulrich Klein ▴ 330