updated 20 months ago by
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written 23 months ago by
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Comment: edgeR: Usage of estimated dispersion from replicates for pools of the same exper
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k.roelfs
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Just so I don't make a mistake, do I just tell voomLmFit if a sample is a pool or a replicate independent of each group, or do I have to sp…
Comment: Error in .order_seqlevels(chrom_sizes[, "chrom"]) : !anyNA(m32) is not TRUE
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Lucia
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0
I am getting the same error from yesterday. Does somebody know what it is going on? or How can we fix it?
Or is it a matter of time to get…
Answer: batch effect correction before DESeq2 analysis
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ATpoint
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2.1k
This is covered in the vignette. Including batch into the design is recommending for DE testing and removal from transformed counts is reco…
Answer: Reproducibility using limma for DE Analysis
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TSauer
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0
Yes, i know that. However, I implemented the imputation step quite long ago, using a different package, exported the data and then did the …
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