Bioconductor Newpackage

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newpackage rtracklayer

updated 24 months ago by shepherl 4.3k • written 24 months ago by Lucille • 0

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newpackage ChAMP

updated 3.4 years ago by Yi Ping • 0 • written 4.3 years ago by Brendon • 0

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newpackage Deadline Release Submission

4.4 years ago shepherl 4.3k

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release Submission newpackage Release Deadline

4.8 years ago shepherl 4.3k

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CONSTANd newpackage

updated 4.7 years ago by guido.barzaghi • 0 • written 4.9 years ago by joris.vanhoutven ▴ 10

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newpackage vignette installation

updated 6.3 years ago by shepherl 4.3k • written 6.3 years ago by Krutik Patel ▴ 10

6 results • Page 1 of 1

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Comment: Which preprocessing steps are needed before running limpa? by miro165sabo • 0

Hi @gordonsmyth, thank you a lot for very fast and valuable response. I edited the question to provide more details.

Answer: Should I use beta1 from limpa::dpc() or limpa::dpcCN(), if they differ? by Gordon Smyth 53k

I tend to use dpcCN(), because it more robust than dpc() to experiments with lots of samples and big differences between samples. You coul…

Answer: Which preprocessing steps are needed before running limpa? by Gordon Smyth 53k

Please see the example limpa analyses given at <http://github.com/smythlab/limpa>, especially the kidney cancer case study. limpa does not…

Comment: Why does IDTaxa trainingSet for SILVA contain "_2" suffixes in the taxonomy name by Korneel • 0

Thanks for the quick reply! If I understand correctly, I think if I keep track of the full lineage, I shouldn't have any risk of collapsin…

Comment: Pathway abundance data from Curatedmetagenomics by yesquokkan • 0

Hello, I was also wondering about the same issue. Did you figure it out?

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Answer: Which preprocessing steps are needed before running limpa?

Answer: Should I use beta1 from limpa::dpc() or limpa::dpcCN(), if they differ?

Answer: Which preprocessing steps are needed before running limpa?

Answer: Should I use beta1 from limpa::dpc() or limpa::dpcCN(), if they differ?

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Scholar to Gordon Smyth 53k

Popular Question to Peter Hickey ▴ 760