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DESeq2 contrast DifferentialExpression

6 weeks ago • updated 5 weeks ago Chanderkant Chaudhary • 0

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contrast edgeR DESeq2

updated 10 months ago by James W. MacDonald 65k • written 10 months ago by Cristina • 0

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deseq2 contrast synergy

updated 10 months ago by Jane ▴ 10 • written 4.9 years ago by steven wink ▴ 90

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Comment: SGSeq: moving toward diffex from SGSeq analysis by Sara • 0

Thank you for your response. I have another question about saving the sgvc result as a CSV file. I would appreciate your help, please. ``` …

Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Poonam • 0

I tried different block lengths first and considered 100000 to be ideal because of the almost similar inter-range distance. S1= bootRange…

Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 41k

The segmentation and block length are key parameters. We recommend for example blocks of length ~500kb. It would help if you would post yo…

Answer: Handling multiple differential expression comparisons by Michael Love 41k

It's typical that results are presented with each group having its own FDR control. So presenting each comparison with the adjusted p-va…

Comment: Too many significant genes when integrating gtex and tcga by ATpoint ★ 4.1k

These two datasets are from completely different experiments / batches. It is utterly meaningless to compare them. I would suggest comparat…

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Answer: CombineArrays for EPIC and EPIC V2

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