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coseq
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coseq does not find object "cap"
coseq
3.4 years ago
JaneDoe
• 0
0
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6
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2.0k
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coseq plotting error: no method for coercing this S4 class to a vector
coseq
updated 3.7 years ago by
andrea.rau
▴ 80 • written 3.8 years ago by
ajwijeratne1
• 0
0
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4
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2.2k
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coseq plotting error: no method for coercing this S4 class to a vector
coseq
RNAseq
clustering
updated 5.8 years ago by
andrea.rau
▴ 80 • written 5.8 years ago by
minyaaa9058
▴ 40
2
votes
10
replies
2.6k
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Coseq error with DESeq2 object: Error in "normFactors"
coseq
rna-seq
updated 6.7 years ago by
andrea.rau
▴ 80 • written 6.7 years ago by
varunorama
• 0
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Comment: upstream git branches of bioc-release
by
Jeroen
▴ 10
OK I have updated https://bioc-release.r-universe.dev accordingly. Let me know if you find version differences when mirroring binaries.
Comment: Large logFC but somewhat high FDR
by
Gordon Smyth
53k
I don't know what `tp1` is. The relevant histogram would be: ``` hist(fit2$p.value[,"KO_vs_WT"]) ```
Answer: p.adjust BH Question
by
Gordon Smyth
53k
Duplicate of https://support.bioconductor.org/p/41077/
Answer: Large logFC but somewhat high FDR
by
Gordon Smyth
53k
Glad you're getting good use out of the package. The results that you show seem pretty much as one would expect, with nothing surprising. …
Comment: After running samtools, the featureCounts command crashed.
by
MarcHintz99
• 0
Thanks for shairng https://subread.sourceforge.net/
Votes
Comment: upstream git branches of bioc-release
Comment: upstream git branches of bioc-release
Comment: upstream git branches of bioc-release
A: p.adjust BH generates duplicate values
Answer: gene Set with high AUC score but no cells assigned to cell type
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