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Querying specific TCGA datasets through the MultiAssayExperiment R package
MultiAssayExperiment curatedCRCdata multiomics TCGA
updated 6.2 years ago by 700 • written 6.2 years ago by ▴ 830
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Answer: WARNING: No Bioconductor dependencies detected. by Laurent Gatto 1.6k
Hi Katja, If I understand correctly, you are focusing on the quantitative data. In this case, you won't need to depend on `Spectra`, or…
Comment: [DESeq2] time series strain-specific differences over time by Michael Love 42k
Yes, this gives mut vs wt at minute 15 comparing to baseline.
Answer: Annotating DMRs by James W. MacDonald 67k
You could use `ChIPpeakAnno`, or `missMethyl`
Comment: [DESeq2] time series strain-specific differences over time by floriandeckert ▴ 30
Dear Michael, thank you very much! I think I do have a intuition of the problem. It is still correct to use the following to compare WT v…
Comment: ı cant install clusterprofiler on my Ubuntu 20.04.6 LTS by semra • 0
``` >BiocManager::install(version = "3.19", lib = "~/R/x86_64-pc-linux-gnu-library/4.4") 'getOption("repos")' replaces Bioconductor standar…
Votes
A: msaprettyprint error in R
Log2FoldChange and normalized count values are not consistent?
A: Log2 fold change value in DESeq2
C: DESeq2 output explanation
Comment: [DESeq2] time series strain-specific differences over time
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