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Creating custom annotation for running ChIPQC and ChIPseeker
customAnnotation
updated 3.0 years ago by • 0 • written 3.3 years ago by • 0
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topGo custom Annotation table
customannotation enrichmentanalysis topGO
updated 4.0 years ago by 67k • written 4.0 years ago by • 0
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Answer: How to sort negative log2FC or FC in RNAseq for GSEA? by ATpoint ★ 4.6k
GSEA asks whether there are general shifts in gene expression towards certain terms. Hence, you would not split your results tables but ord…
Comment: EdgeR Biological CVs by James • 0
Cheers. I presume question (1) would be answered by using a prior G0 of 0? For question (2), I was expecting a biological reason (noisier …
Comment: EdgeR Biological CVs by James • 0
Thank you Gordon and Joseph
Comment: EdgeR Biological CVs by Joseph • 0
I believe the published study provides answers to your questions. Yunshun Chen and Pedro Baldoni's recent papers on edgeR may also be of in…
Answer: EdgeR Biological CVs by Gordon Smyth 52k
I think your questions are answered by the published paper. You might also like to consult recent papers on edgeR by Yunshun Chen and Pedro…
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Answer: Error in download.file for TCGAutils::symbolsToRanges
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Answer: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt?
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