Biostar Enrichmentanalysis

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topGO enrichmentanalysis geneontology

updated 17 months ago by Lluís Revilla Sancho ▴ 670 • written 17 months ago by Aini • 0

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customannotation enrichmentanalysis topGO

updated 17 months ago by James W. MacDonald 60k • written 17 months ago by Aini • 0

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Comment: Error: BiocParallel errors by lxl13260684135 • 0

I came across the same problem, have you solved it?

Answer: How to get DESeq2 results for a list of genes by ATpoint ★ 1.3k

Standard rules apply for filtering in R. If the genes are the rownames of the results object `res` then: res[my_ges,] or if the colu…

Answer: ComplexHeatmap: Change font size of annotation axis values by nalaspina • 0

Someone on the original post was kind enough to provide the answer (in bold below): row_ha = rowAnnotation(foo2 = runif(10), bar2 = anno…

Answer: setting sizeFactors from scran :: caculateSumFactors. by ATpoint ★ 1.3k

You can conveniently convert your SingleCellExperiment to a DESeqDataSet, see https://bioconductor.org/packages/devel/bioc/vignettes/scran/…

Comment: Combine GRanges(List) to a single GRanges with unified breakpoints by Rodrigo • 0

@malcolm-cook-6293, thank you for your response, I'm working through your code as we speak.

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How to get DESeq2 results for a list of genes

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Scholar to James W. MacDonald 60k

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