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updated 8.3 years ago by James W. MacDonald 67k • written 8.3 years ago by koeniger ▴ 10

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Comment: ColData and ERROR: rows did not converge in beta, labelled in mcols(object)$beta by Michael Love 42k

That is the rows that did converge.

Answer: Is my time course analysis with DESeq2 valid? by Michael Love 42k

For choosing the correct statistical design, I recommend working with a local statistician or someone familiar with linear models in R. I h…

Answer: WGCNA coupled with differential expression analysis: question about baseline mod by kaidaneil52 • 0

Using WGCNA (Weighted Gene Co-expression Network Analysis) alongside differential expression analysis can enhance insights into gene regula…

Comment: biomaRt rnorvegicus_gene_ensembl not available anymore by Mike Smith ★ 6.6k

Unfortunately I received this update from the Ensembl Helpdesk on 2024-11-14: > Unfortunately, the fix is taking longer than expected and …

Comment: ColData and ERROR: rows did not converge in beta, labelled in mcols(object)$beta by daniela.gutierrezandrade • 0

Hello, I am running into a similar issue. After setting the design, at the beginning of the analysis I filter rows with low counts. d…

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Answer: [How to construct a model.matrix ]

Answer: Handling biological replicates in DESeq2

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