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deepbluer
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How to convert 0 based genomic ranges found in CEEHRC bedgraph files into 1 based genomic ranges used in R?
deepbluer
gziv
4.7 years ago
helimelanie
• 0
1
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2
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Unable to obtain SIGNAL_VALUE for bedgraph files in DeepBlueR
deepbluer
CEEHRC
debgraph
4.7 years ago
helimelanie
• 0
0
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691
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Problem installing DeepBlueR
DeepBlueR
updated 5.8 years ago by
felipe.albrecht
• 0 • written 5.8 years ago by
ogianatiempo
• 0
3 results • Page
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Comment: Not able to download recount3 data
by
Niveditha
▴ 10
Thank you for the update, Leo. I'll check on this and get back to you in case the issue still persists.
Comment: Error in .order_seqlevels(chrom_sizes[, "chrom"]) : !anyNA(m32) is not TRUE
by
Hervé Pagès
16k
See https://github.com/Bioconductor/GenomeInfoDb/issues/82#issuecomment-1409482932
Comment: Error in .order_seqlevels(chrom_sizes[, "chrom"]) : !anyNA(m32) is not TRUE
by
Hervé Pagès
16k
See https://github.com/Bioconductor/GenomeInfoDb/issues/82#issuecomment-1409482932
Comment: Sva and batch effect
by
Gordon Smyth
47k
(+1). I find that ComBat tends to introduce spurious differential expression so, you think there's a batch effect affecting the variances a…
Comment: Advice for the analysis of microarray data with limma
by
Gordon Smyth
47k
You mean references on orthogonal polynomials? Polynomial approximation is a classic topic in mathematics and statistics and there are many…
Votes
Answer: Sva and batch effect
Answer: AnnotationForge::makeOrgPackage "argument is missing, with no default" Errors
Comment: Error in .order_seqlevels(chrom_sizes[, "chrom"]) : !anyNA(m32) is not TRUE
Comment: Error in .order_seqlevels(chrom_sizes[, "chrom"]) : !anyNA(m32) is not TRUE
Answer: Limma-voom with inverse probability weights
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