Bioconductor Degraph

Showing : degraph • reset

0

votes

4

replies

1.1k

views

RNASeqData DEGraph RNASeq edgeR DegNorm

written 17 months ago by Shaozhen • 0

0

votes

2

replies

891

views

rnaseqGene edgeR DEGraph DifferentialExpression

updated 21 months ago by Gordon Smyth 53k • written 21 months ago by z_bahari • 0

0

votes

4

replies

1.7k

views

GO DEGraph GO DEGraph

14.8 years ago Dick Beyer ★ 1.4k

0

votes

1

reply

1.9k

views

Pathways Network SPIA DEGraph Pathways Network SPIA DEGraph

updated 14.8 years ago by January Weiner ▴ 370 • written 14.8 years ago by laurent jacob ▴ 100

4 results • Page 1 of 1

Recent ...

Replies

Comment: Question about RE-agnostic mode for intact Hi-C and Micro-C normalization(HiCDCP by TikTsoksocissalpc • 0

Normalizing complex datasets like Hi C can be challenging, much like setting up a PC for optimal gaming performance. Just as careful tuning…

Comment: p.adjust BH Question by TikTsoksocissalpc • 0

Thanks for sharing your question about RMA limma analysis While working on your experiment, it s always helpful to have some background mu…

Answer: NUPOP usage by shepherl 4.2k

You should read the documentation in the package especially the package vignette https://bioconductor.org/packages/release/bioc/html/NuPoP.…

Comment: How can I correctly use phyloseq with Docker? by fnfgame • 0

In a rocker image, this error usually means the Bioconductor install happened as root but the runtime library paths used by the shiny user …

Comment: DECIPHER DesignProbes unable to design FISH-probes by Erik Wright ▴ 150

Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?

Votes

C: DESeq2 Following RSEM

Upcoming Ensembl API and data access changes - new blog post available

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?

Answer: Large logFC but somewhat high FDR

Comment: upstream git branches of bioc-release

Awards • All

Popular Question to James W. MacDonald 68k