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degraph
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DE analysis in EdgeR /Can any one please help me.
RNASeqData
DEGraph
RNASeq
edgeR
DegNorm
written 5 months ago by
Shaozhen
• 0
0
votes
2
replies
575
views
RNAseq analysis
rnaseqGene
edgeR
DEGraph
DifferentialExpression
updated 9 months ago by
Gordon Smyth
52k • written 9 months ago by
z_bahari
• 0
0
votes
4
replies
1.4k
views
DEGraph demo exprData question
GO
DEGraph
GO
DEGraph
13.8 years ago
Dick Beyer
★ 1.4k
0
votes
1
reply
1.7k
views
Which resources for pathway analysis?
Pathways
Network
SPIA
DEGraph
Pathways
Network
SPIA
DEGraph
updated 13.8 years ago by
January Weiner
▴ 370 • written 13.8 years ago by
laurent jacob
▴ 100
4 results • Page
1 of 1
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Answer: Margins for gene_set_enrichment_plot
by
Leonardo Collado Torres
★ 1.1k
Hi, In version 1.19.4 of `spatialLIBD` @lahuuki re-implemented the `gene_set_enrichment_plot()` function using `ComplexHeatmap::Heatmap(…
Comment: miRTarRnaseq library
by
mercedeh.movassagh
▴ 20
Maria please read the mirTarRnaSeq paper. In particular, Supplemental Table 2, clarifies all the statistical models, inputs and outputs. If…
Comment: Help using rtracklayer for gene ID extraction
by
James W. MacDonald
67k
Telling me you can't do something without showing what you tried is not helpful. When posting here, try to put yourself in the shoes of peo…
Comment: miRTarRnaseq library
by
María Calvo
• 0
Hello Mercedeh, excuse me for not explaining it adecuately, Im using the "Part3 - Identify significant miRNA mRNA relationships for 2 time …
Answer: Need new version : tx2gene.gencode.v47.csv
by
Guido Hooiveld
★ 4.1k
Assuming that you would like to import the results from `salmon`, it is highly recommended to now use `tximeta`. By doing so, all required …
Votes
Whether to build DESeq2 model with all data and then contrast groups or subset groups first, build model and then contrast?
Answer: Feature Counts - potential bug with outfile.jcounts
Answer: Feature Counts - potential bug with outfile.jcounts
Answer: Pre-filtering TPM kallisto for ssGSEA / DESeq2
Answer: Mapping Between GenBank ID's and Uniprot
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