Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
des
•
reset
0
votes
3
replies
277
views
DESeq2 inconsistent fits depending on model design with interacting factors
des
DESeq2
written 3 months ago by
fedor.bezrukov
▴ 10
0
votes
1
reply
643
views
unreal negative log2fc values
DESeq2
des
updated 17 months ago by
James W. MacDonald
68k • written 17 months ago by
Atul K.
• 0
2
votes
9
replies
1.8k
views
Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
DESeq2
RUVSeq
RUVseq
BatchEffect
DES
updated 19 months ago by
James W. MacDonald
68k • written 19 months ago by
Alexandre
• 0
0
votes
1
reply
629
views
Bioinformatics student
Des
DESeq2
updated 20 months ago by
hemantcnaik
• 0 • written 20 months ago by
Sahar
• 0
2
votes
2
replies
779
views
With DESeq2 "Not full rank" Error with design
DESeq2
DEs
21 months ago
feather-W
• 0
0
votes
1
reply
902
views
Design structure
DESeq2
des
updated 3.0 years ago by
Michael Love
43k • written 3.1 years ago by
Devin
• 0
0
votes
1
reply
992
views
Design Matrix Singularity Error
DES
DESIGN
updated 3.2 years ago by
Michael Love
43k • written 3.2 years ago by
mike
• 0
0
votes
1
reply
1.2k
views
Matrix not full rank (time-series experiment with one group and covariates )
DESeq2
DES
updated 5.0 years ago by
Michael Love
43k • written 5.0 years ago by
heikki.sarin
▴ 10
8 results • Page
1 of 1
Recent ...
Replies
Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment
by
Michael Love
43k
BTW, I tested with no issue on MacOS ARM on our previous github issue.
Answer: DESeq(dds, parallel=TRUE) wrong args for environment subassignment
by
Michael Love
43k
The DESeq2 error makes sense, as we've talked about, given that the simple `bplapply` isn't working in your setup. Maybe give the traceb…
Answer: PTM analysis in LIMPA
by
Gordon Smyth
53k
For PTM analysis, the usual quantification command dpcQuant() is replaced by dpcImpute(). Otherwise the limpa pipeline is the same as for a…
Answer: problem reading bam files into nucleR
by
James W. MacDonald
68k
The first step is to update to the current versions of R/Bioconductor and try again. It's possible that you have run into a bug that's alre…
Answer: Question about DESeq2 Design for Paired Treatment Study
by
ATpoint
★ 5.0k
It's a paired analysis so you don't need any patient-specific covariates such as age and sex. What you call batch effect might just be the …
Votes
C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
Awards
• All
Commentator
to
sina.nassiri
▴ 130
Popular Question
to
Hervé Pagès
16k
Popular Question
to
jared.andrews07
▴ 30
Popular Question
to
James W. MacDonald
68k
Popular Question
to
shepherl
4.2k
Locations
• All
The city by the bay,
2 hours ago
United States,
3 hours ago
United States,
7 hours ago
United States,
8 hours ago
WEHI, Melbourne, Australia,
8 hours ago
Traffic: 1012 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6