Showing : des • reset
0
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3
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DESeq2 inconsistent fits depending on model design with interacting factors
des DESeq2
written 5 months ago by ▴ 10
0
votes
1
reply
670
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unreal negative log2fc values
DESeq2 des
updated 18 months ago by 68k • written 18 months ago by • 0
2
votes
9
replies
1.9k
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Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
DESeq2 RUVSeq RUVseq BatchEffect DES
updated 20 months ago by 68k • written 20 months ago by • 0
0
votes
1
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652
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Bioinformatics student
Des DESeq2
updated 21 months ago by • 0 • written 21 months ago by • 0
2
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2
replies
823
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With DESeq2 "Not full rank" Error with design
DESeq2 DEs
22 months ago feather-W • 0
0
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1
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934
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Design structure
DESeq2 des
updated 3.1 years ago by 43k • written 3.2 years ago by • 0
0
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1
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1.0k
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Design Matrix Singularity Error
DES DESIGN
updated 3.3 years ago by 43k • written 3.3 years ago by • 0
0
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1
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1.2k
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Matrix not full rank (time-series experiment with one group and covariates )
DESeq2 DES
updated 5.1 years ago by 43k • written 5.1 years ago by ▴ 10
8 results • Page 1 of 1
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Comment: Quality control of shotgun metagenomics data by elonlilx54 • 0
If you are a fan of word guessing games like Wordle, then you definitely cannot ignore [Octordle][1] - a more challenging and attractive ex…
Answer: Incosistencies in buildSNNGraph() function by stephengriffin04 • 0
Thank you for shedding light on the inconsistencies in the `buildSNNGraph()` function. It's crucial for users to address these issues as th…
Answer: A problem occurs when running the monocle2 by stephengriffin04 • 0
I totally feel you on the monocle2 issues! I had a similar run-in with unexpected errors last week that had me pulling my hair out. Did you…
Answer: limpa-blank normalization and Spectronaut's PTM stoichiometry by Gordon Smyth 53k
limpa reads standard feature-level output from Spectronaut. You do not need to make any changes to the output before reading it into limpa.…
Comment: Question about the filterByExpr function inputs in edgeR by mohammedtoufiq91 ▴ 10
@gordonsmyth Noted, thank you very much.
Votes
Comment: Question about the filterByExpr function inputs in edgeR
Answer: Question about the filterByExpr function inputs in edgeR
Answer: Question about the filterByExpr function inputs in edgeR
A: DESeq2: What is the unit of DESeq2 normalized read count (VST)? Is it tag per mi
Answer: Clarification on counting in Rsubread (featureCounts)
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