Bioconductor Des

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369

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des DESeq2

written 6 months ago by fedor.bezrukov ▴ 10

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687

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DESeq2 des

updated 19 months ago by James W. MacDonald 68k • written 19 months ago by Atul K. • 0

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2.0k

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DESeq2 RUVSeq RUVseq BatchEffect DES

updated 21 months ago by James W. MacDonald 68k • written 21 months ago by Alexandre • 0

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661

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Des DESeq2

updated 22 months ago by hemantcnaik • 0 • written 22 months ago by Sahar • 0

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840

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DESeq2 DEs

23 months ago feather-W • 0

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953

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DESeq2 des

updated 3.2 years ago by Michael Love 43k • written 3.3 years ago by Devin • 0

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1.0k

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DES DESIGN

updated 3.4 years ago by Michael Love 43k • written 3.4 years ago by mike • 0

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1.4k

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DESeq2 DES

updated 5.1 years ago by Michael Love 43k • written 5.1 years ago by heikki.sarin ▴ 10

8 results • Page 1 of 1

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Answer: Should I use beta1 from limpa::dpc() or limpa::dpcCN(), if they differ? by Gordon Smyth 53k

I tend to use dpcCN(), because it more robust than dpc() to experiments with lots of samples and big differences between samples. You coul…

Answer: Which preprocessing steps are needed before running limpa? by Gordon Smyth 53k

Please see the example limpa analyses given at <http://github.com/smythlab/limpa>, especially the kidney cancer case study. limpa does not…

Comment: Why does IDTaxa trainingSet for SILVA contain "_2" suffixes in the taxonomy name by Korneel • 0

Thanks for the quick reply! If I understand correctly, I think if I keep track of the full lineage, I shouldn't have any risk of collapsin…

Comment: Pathway abundance data from Curatedmetagenomics by yesquokkan • 0

Hello, I was also wondering about the same issue. Did you figure it out?

Comment: [DESeq2] Changing dispersion estimates between runs of DESeq2 by colinmccornack • 0

FWIW: This seems to be due to architectural differences between two compute nodes I was running on, specifically with the DESeq2:::fitNbino…

Votes

Answer: Which preprocessing steps are needed before running limpa?

Answer: Should I use beta1 from limpa::dpc() or limpa::dpcCN(), if they differ?

Answer: Which preprocessing steps are needed before running limpa?

Answer: Should I use beta1 from limpa::dpc() or limpa::dpcCN(), if they differ?

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Popular Question to Peter Hickey ▴ 760